LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto13g0627	ATGGCGATCGCGACGGTGTTATTTGCAGTTTTAGTGGTGGGATTTCTGGGCGTAGGGTCAGAGTATATAGAATACAATACAACGCAGAGGATCGTCCCTGATAAAATTAATGTCCATTTGGTGCCTCACTCACACGATGATGTTGGCTGGCTCAAGACTGTTGACCAGTACTACGTTGGAGCCAACAACTCCATTCGGGGTGCATGTGTACAAAACGTATTGGATTCCGTGATTTCCGCGCTACTGGATGATAAGAATCGCAAGTTCATCTATGTTGAGATGgcATTTTTCCAGAGATGGTGGAGACAGCAAAGCAAAACAATGAAAGTCAAAGTGAAGGAACTTGTCAACTCGGGTCAGCTGGAATTCATAAATGGGGGTATGTGTATGCATGATGAGGCCACCCCGCATTATATTGATCTAATTGATCAGACGACTCTGGGGCATCAATTCATTAAAAATGAATTCAGTAAGATTCCGAGAGTTGGCTGGCAGATTGATCCTTTTGGCCATTCTGCAGTTCAGGCTTATTTGCTTGGTGCTGAGCTAGGATTTGATTCACTCTTTTTTGCAAGAATTGATTACCAAGATAGAGCAAAGCGATTGAAGGAGAGGACCCTTGAGGTTGTTTGGCGAGGATCTAGATCTCTTGGATCCTCTTCACAAATATTCACAGGGATATTTCCCAGGCATTATGATCCTCCTGATGGTTTCACATTTGAGATAAATGATGTTTCCCCTCCTATTCAGGATGACATTCTCCTGTTCGACTATAATGTTCAAGAAAGAGTCAATGACTTCGTATCTGCTGCTTTAGCTCAGGCTAATGTCACTAGAACAAATCACATTATGTGGACAATGGGGACTGACTTCCGTTATCAATACGCTAATTCGTGGTTCAGACAGATGGACAAGTTTATCCACTATGTCAATCTGGATGGGCGTGTCAATGTGTTATATTCAACACCATCTATCTACACTGATGCAAAATATGCAGCCAATGAGCAATGGCCTCTCAAATTTGATGATTTCTTCCCATACGCTGATCATCCAAATGCATATTGGACTGGTTACTTTACAAGTAGGCCTGCTTTAAAGGGTTATGTCAGAACGATGAGTGGTTATTATCAGGCAGCAAGACAACTGGAATTCTTTAAAGGAAGAAGCAAATCAGGGCCCAATACTGATGCAATAGCGGATGCTTTGGCAATTGCTCAGCATCATGATGCAGTTAGTGGTACAGAAAGACAGCATGTTGCTTCTGATTATGCAATGCGAATCTCAGTGGGCTATTTGGAGGCTGAGAAGTTGGTTTCATCTGCACTTGTTTTCTTGTGCCCTCTTCTTAATATAAGTTACTGTCCTCCATCAGAATCTAGCTTGTCTGACAGGAAAAGCTTGGCGGTTGTTATCTATAATCCTCTTGCGTGGAACAGGGAGGAAGTAATACGAATTCCAGTTTCCACTGAAAAGGTTTTTGTCCAGGACTCTGCTGGGAAAGAAATTGAGTCTCAGCTTCTACCTTTGTCAAATGCCACTTCGAGAATAAGAAAACATTATGTCGAAGCACATCTAGGAATCAAACCTTCTTTCGAGCCGAAGTATTTGCTTGCATTTTCAGTGTCAGTACCTCCTCTCGGTTTCAGTACCTACAGAGTGTCAAGGCCTAAACAGACAAGTCATAGATCTACCTCTACTAGTACAATCTCAAAGGTATTCCAATTAGAAGGAATTACAAATAATAGCATAGAGGTTGGCCAGGGGAACCTAAAGCTACTTTATTCTGCAGATGATGGAAAACTTACTCATTACATCAATAGTAGAAATCAGGTTACAGCATCTGTTGAACAATCATACAGTTATTACTCTGGAAATGATGGGACAGATAAAGATCCTCAGGCTTCTGGGGCATATGTCTTCCGTCCAAATGATTCAATTACAATAAAATCTGATCACCAGACTCCTCTAACTGTCCTACGTGGTCCAGTATTGGATGAAATACATCAACACCTTAACCCTTGGATATCTCAGATTACTAGGATATTCAAGGGGAAGGAGCATGCTGAAGTTGAGTTCACAGTAGGTTACCTCCTCTTGCTCATCAATATTGGTCCTATACCTGTGGATGATGGCATTGGGAAAGAAATCATTACTCAAATTACAACTACAATGAAGACCAACAGAACCTTCTATACAGATTCTAATGGACGTGATTTCATTAAAAGGATTCGAGATTTCAGGACAGACTGGGATCTACAAGTAAATCAACCAATTGCTGGAAATTATTACCCTATTAATTTAGGAATATATGAGCAAGATAGTAGTATGGAACTCTCAGTGCTGGTGGACCGCTCAATAGGAGGGTCAAGCTTGGTGGACGGTCAAGTAGAGCTGATGCTACATAGGAGGTTACTTCACGATGATTCAAGAGGTGTCGGAGAGGTGCTCAATGAAACAGTTTGCGTTGTTGATAAATGTGAAGGTTTAACTATTCAAGGAAAACTGTATCTTAGAATTGATCGGCTAGGTGAAGGTGCCAAGTGGCGTCGTACTGTTGGCCAGGAAATATATTCACCACTACTATTGGCCTTCACAGAACAGgatgatgatgaatggtTGCATTTTCCATCAGCATTTTCTGGCATAGATTCTTCATACAGTTTACCAAACAACACTGCTCTTATAACCTTCCAGGAACTTGAAAATGGAAAAGTACTCCTTAGATTGGCTCATCTTTATGAGATTGGAGAAGACAAAGATTATTCAGCAATGGCAAGTGTGGAACTAAAAAAGCTGTTTCCTAACAAGAAGATAAGAAAAGTGACCGAGATGAGTTTGTCTGCTAATCAAGAAAGAgctgaaatggaaaagaagaggttATTGTGGAAGGTGCAAGGCGCTGCAGAAGAAGCTAAGGTGGTGAGGGGAGGCCCAATTGATCCTGCGAAGCTTGTGGTTGAACTTGCTCCAATGGAGATTCGGACGTTCCTTATTGACTTTGATTCCCTTCTAACAGTAACTGGAGTAGGAAATCATGGGGTTATtggtgcAGCTAGTACTAGTTCTTATAGGTCCGGATCCTCTACTGGTGTATTTTTCTGCGCAGAGAGAGAACTACAGCAATGGATTAGGTGCCAAAATCAGTGTCCTTACTTGTTGCTGTATGATAACTTATTCCCATAA	3183	0.4084	MAIATVLFAVLVVGFLGVGSEYIEYNTTQRIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALLDDKNRKFIYVEMAFFQRWWRQQSKTMKVKVKELVNSGQLEFINGGMCMHDEATPHYIDLIDQTTLGHQFIKNEFSKIPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKERTLEVVWRGSRSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDILLFDYNVQERVNDFVSAALAQANVTRTNHIMWTMGTDFRYQYANSWFRQMDKFIHYVNLDGRVNVLYSTPSIYTDAKYAANEQWPLKFDDFFPYADHPNAYWTGYFTSRPALKGYVRTMSGYYQAARQLEFFKGRSKSGPNTDAIADALAIAQHHDAVSGTERQHVASDYAMRISVGYLEAEKLVSSALVFLCPLLNISYCPPSESSLSDRKSLAVVIYNPLAWNREEVIRIPVSTEKVFVQDSAGKEIESQLLPLSNATSRIRKHYVEAHLGIKPSFEPKYLLAFSVSVPPLGFSTYRVSRPKQTSHRSTSTSTISKVFQLEGITNNSIEVGQGNLKLLYSADDGKLTHYINSRNQVTASVEQSYSYYSGNDGTDKDPQASGAYVFRPNDSITIKSDHQTPLTVLRGPVLDEIHQHLNPWISQITRIFKGKEHAEVEFTVGYLLLLINIGPIPVDDGIGKEIITQITTTMKTNRTFYTDSNGRDFIKRIRDFRTDWDLQVNQPIAGNYYPINLGIYEQDSSMELSVLVDRSIGGSSLVDGQVELMLHRRLLHDDSRGVGEVLNETVCVVDKCEGLTIQGKLYLRIDRLGEGAKWRRTVGQEIYSPLLLAFTEQDDDEWLHFPSAFSGIDSSYSLPNNTALITFQELENGKVLLRLAHLYEIGEDKDYSAMASVELKKLFPNKKIRKVTEMSLSANQERAEMEKKRLLWKVQGAAEEAKVVRGGPIDPAKLVVELAPMEIRTFLIDFDSLLTVTGVGNHGVIGAASTSSYRSGSSTGVFFCAERELQQWIRCQNQCPYLLLYDNLFP	1060

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto13g0627	1060	Gene3D	Glycoside hydrolase 38, N terminal domain	36	316	IPR027291	-
	Sto13g0627	1060	Pfam	Glycosyl hydrolases family 38 C-terminal domain	587	810	IPR011682	GO:0004559\|GO:0006013
	Sto13g0627	1060	SMART	Alpha_mann_mid_2	353	427	IPR015341	GO:0004559\|GO:0006013
	Sto13g0627	1060	Gene3D	-	585	858	-	-
	Sto13g0627	1060	SUPERFAMILY	Glycoside hydrolase/deacetylase	25	351	IPR011330	GO:0005975
	Sto13g0627	1060	Gene3D	-	456	584	IPR013780	-
	Sto13g0627	1060	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	893	997	IPR041147	-
	Sto13g0627	1060	Pfam	Glycosyl hydrolases family 38 N-terminal domain	37	348	IPR000602	GO:0004559\|GO:0006013
	Sto13g0627	1060	CDD	GH38N_AMII_LAM_like	36	311	-	-
	Sto13g0627	1060	Gene3D	Glycoside hydrolase family 38, central domain	317	395	IPR037094	GO:0004559\|GO:0006013
	Sto13g0627	1060	Gene3D	Glycoside hydrolase family 38, central domain	396	448	IPR037094	GO:0004559\|GO:0006013
	Sto13g0627	1060	Gene3D	-	877	1002	-	-
	Sto13g0627	1060	PANTHER	ALPHA-MANNOSIDASE	9	1003	-	-
	Sto13g0627	1060	Pfam	Alpha mannosidase middle domain	353	443	IPR015341	GO:0004559\|GO:0006013
	Sto13g0627	1060	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	352	445	IPR028995	-
	Sto13g0627	1060	PANTHER	ALPHA-MANNOSIDASE	9	1003	-	-
	Sto13g0627	1060	SUPERFAMILY	Galactose mutarotase-like	444	1000	IPR011013	GO:0003824\|GO:0005975\|GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto13g0627	Sto-Chr13	5812352	5822406	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto13g0627	6	940	Glycoside Hydrolase	AT3G26720	72.537	0.0	1448

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto13g0627	K01191		-	gmx:100795651	1687.93

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto13g0627	13	5812352	5822406	Sto13g0627	13	5812352	5822406	ECH
	Sto8g1628	8	10448038	10463271	Sto13g0627	13	5812352	5822406	ECH