Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1539 ATGGCGGAGAAGTACAACCTGAAGAATCCGGCGGTGAAGCGGATTCTACAGGAGGGAACTTTTCAGCTCATCCTAGTCTCACTTAAACACTTGAAGCTTGAATGTAAACTGAATCTTATGAAGCAACTCAACATGTTACACAATGGTATAGGATATGATCTTGTCAATGAGAATAAAGGCTGGGAACTAGAGAGGATGAGGGAAGGAAGGCCTGCGGATTCTGAATTTGAAGGTGGTATTTACCATGGACGGATCCAGTTGCCTGCAGAATATCCATTCAAACCACCTTCATTTATGTTATTGACACCTAATGGTCGCTTTGAGACCCAAACCAAGATTTGCTTGAGCATATCGAATCATCATCCTGAGCATTGGCAGCCATCATGGAGTGTAAGGACTGCTTTAGTTGCCTTGATTGCATTCATGCCCACCAGCCCAAATGGTGCATTGGGCTCTTTGGACTACAAGAAGGAAGAGAGGCGTTCCTTGGCCATTAAATCCCGTGAAGCTCCTCCAAGATTTGGTACTCCTGAACGTCAAAAACTCATTGACGAGATACATGAGTATATGCTCAGCAAGGCACCCCCTGTTCCTCAACTTAGCCCCTCACAGGCTCCTGAAGAACAACACCTTACAAACGAGGCTTCCGAGGCCCAGGTTAATTCGCAAAATTCCGGCGCCGATGCCGATGCCTTTCCGGCAGTACAGGATTTTCCAGATCAACCAGAAGATGACAGAATTGTTGAAGAACAAGAACTGCCTGCAACTGCAACTACTACTACTAATCCTAATCCTGCAAGAACTGAAGCTTCAAAAGAGGCTCCATCCAGTACTGTCCCAAGAAATCAGGTGCCCCAAAGGCAAAATTCAGATACGACTAGGGTCCAAAAACCTGACGATCGCTTGTTCACATTGGCTGCCATTGGACTTACTATTGCAATTGTGGTGCTTCTGCTCAAGAAGTTCATCAAATCTACTGAACATGGTGCTGTTTTCATGAATGGATCTTAG 1011 0.454 MAEKYNLKNPAVKRILQEGTFQLILVSLKHLKLECKLNLMKQLNMLHNGIGYDLVNENKGWELERMREGRPADSEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTSPNGALGSLDYKKEERRSLAIKSREAPPRFGTPERQKLIDEIHEYMLSKAPPVPQLSPSQAPEEQHLTNEASEAQVNSQNSGADADAFPAVQDFPDQPEDDRIVEEQELPATATTTTNPNPARTEASKEAPSSTVPRNQVPQRQNSDTTRVQKPDDRLFTLAAIGLTIAIVVLLLKKFIKSTEHGAVFMNGS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1539 336 Gene3D Ubiquitin Conjugating Enzyme 29 200 IPR016135 -
Sto12g1539 336 MobiDBLite consensus disorder prediction 203 229 - -
Sto12g1539 336 MobiDBLite consensus disorder prediction 253 295 - -
Sto12g1539 336 Pfam Ubiquitin-conjugating enzyme 71 147 IPR000608 -
Sto12g1539 336 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 71 336 - -
Sto12g1539 336 SMART ubc_7 37 195 - -
Sto12g1539 336 CDD UBCc 39 169 IPR000608 -
Sto12g1539 336 MobiDBLite consensus disorder prediction 194 241 - -
Sto12g1539 336 PANTHER BNAC01G21910D PROTEIN 71 336 - -
Sto12g1539 336 SUPERFAMILY UBC-like 60 155 IPR016135 -
Sto12g1539 336 MobiDBLite consensus disorder prediction 253 292 - -
Sto12g1539 336 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 26 187 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1539 Sto-Chr12 10693049 10696273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1539 3 334 Miscellaneous Gene Families AT3G17000 54.118 2.25e-105 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1539 K10578 - gmx:100804054 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1539 12 10693049 10696273 Sto12g1539 12 10693049 10696273 ECH