Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1533 ATGGCCACTGGACAACTGTTCTCTCGCACTACTCAAGCATTGTTTTACAACTACAAGCAGCTTCCCATCCAGCGGATGCTTGATTTTGACTTCCTTTGTGATGAAAACTCCAATTTTGTATTTGTAGGAAGGGAAACACCATCAGTTGCGGGAATAATTAATCCTGGCGCAGAGGGATTTCAGAAGCTCTTCTTTGGTCAGGAGGAAATTGCCATCCCAGTGCAttctacCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAATTTTGCATCATTTAGAAGTGCTGCTGCATCATCCTTGGCTGCTTTGAAGCAGCCAACAATTAGAGTTGTTGCCATTATTGCTGAAGGTGTACCTGAGGCAGACACTAAGCAATTGATTGCATTTGCACGATCAAACAATAAGGTTGTTATTGGCCCAGCCACTGTTGGAGGCATTCAAGCTGGTGCTTTTAAGATCGGTGACACAGCCGGAACAATTGACAATATAATTCAGTGCAAGCTGTACAGGCCAGGATCTGTTGGCTTTGTTTCAAAATCTGGTGGGATGTCCAATGAATTGTACAACTCAATTGCCCGTGTAACTGATGGAATTTATGAAGGCATTGCCATTGGAGGGGATGTTTTCCCAGGTTCTACACTTTCTGATCATATCTTAAGATTTAACAACATACCACAGGTTAAAATGATGGTTGTACTTGGAGAACTTGGTGGGCGTGATGAGTATTCCCTAGTGGAAGCCCTAAAACAAGGGAAGGTGACAAAACCAGTTGTTGCCTGGGTTAGTGGAACCTGTGCACGACTATTCAAATCAGAAGTACAATTTGGTCATGCTGGAGCTAAAAGTGGTGGTGAATTAGAGTCTGCTCAAGCAAAGAATCAAGCACTTAGGGATGCTGGAGCTATTGTTCCTACTTCATATGAAGCTCTTGAAGCTGCAATAAAGGAAACATTCGACAAATTGGTTGAGGGAGGGAAGATTACACCAGTGAAGGAGATTACTCCTCCACAGATCCCTGAGGACCTTAACTCTGCAATTAAGGCTGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATCTCTGATGACAGAGGTATGTTGGGAACCTTTGATGCTTTAATATGTGAGGAGCCATGCTATGCTGGTGTGCCCATGTCCTCCATTGTTGAAAAGGGTTTAGGTGTAGGTGATGTTATCTCTCTTTTGTGGTTCAAACGCAGCCTTCCTCGTTACTGTACACAATTTATTGAGATATGCATCATGCTTTGTGCCGACCATGGTCCTTGTGTCTCTGGTGCTCACAATACAATAGTGACAGCAAGAGCTGGGAAGGACCTTGTTTCCAGTCTTGTATCAGGTTTGCTTACTATTGGTCCTCGATTTGGTGGTGCCATTGATGATGCTGCTCGCTACTTCAAGGATGCTTATGAGAGGGGTCTTACACCTTATGAGTTTGTTGAAGGTATGAAGAAGAAGGGCATTCGTGTGCCAGGAATCGGGCATAGGATCAAGAGAGGAGACAACAGAGATAAGAGAGTAGAGCTGCTTCAGCATTTTGCACGCACACATTTTCCTTCTGTGAAATACATGGAATATGCTGTTCAAGTTGAAACCTACACCCTCTCGAAGGCAAATAACTTGGTTCTTAATGTGGATGGAGCAATTGGATCCCTTTTCTTGGATCTCCTTGCTGGAAGTGGAATGTTCACCAAGCAAGAGATTGATGAAATTGTAGGGATTGGCTATCTGAATGGACTCTTCGTGCTGGCACGCTCCATTGGTCTGATTGGGCATACCTTTGACCAAAAGAGACTGAAACAACCACTGTACCGCCACCCATGGGAGGATGTTCTGTACACCAAGTGA 1884 0.4411 MATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCDENSNFVFVGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTIEAACAAHPTADVFINFASFRSAAASSLAALKQPTIRVVAIIAEGVPEADTKQLIAFARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNELYNSIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGELESAQAKNQALRDAGAIVPTSYEALEAAIKETFDKLVEGGKITPVKEITPPQIPEDLNSAIKAGKVRAPTHIISTISDDRGMLGTFDALICEEPCYAGVPMSSIVEKGLGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYERGLTPYEFVEGMKKKGIRVPGIGHRIKRGDNRDKRVELLQHFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVGIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1533 627 Gene3D - 2 146 - -
Sto12g1533 627 PRINTS Succinyl-CoA synthase signature 105 122 - -
Sto12g1533 627 PRINTS Succinyl-CoA synthase signature 208 226 - -
Sto12g1533 627 PRINTS Succinyl-CoA synthase signature 239 252 - -
Sto12g1533 627 PRINTS Succinyl-CoA synthase signature 275 292 - -
Sto12g1533 627 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 24 145 IPR036291 -
Sto12g1533 627 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 177 202 IPR017866 -
Sto12g1533 627 Pfam Citrate synthase, C-terminal domain 407 617 IPR002020 GO:0046912
Sto12g1533 627 Pfam CoA-ligase 183 307 IPR005811 GO:0003824
Sto12g1533 627 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 183 212 IPR033847 -
Sto12g1533 627 Gene3D - 147 332 IPR016102 -
Sto12g1533 627 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 2-LIKE 1 627 - -
Sto12g1533 627 SUPERFAMILY Citrate synthase 139 623 IPR036969 GO:0046912
Sto12g1533 627 Gene3D - 469 566 IPR016143 -
Sto12g1533 627 PANTHER ATP-CITRATE SYNTHASE 1 627 - -
Sto12g1533 627 CDD CCL_ACL-C 388 625 - -
Sto12g1533 627 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 268 284 IPR017440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1533 Sto-Chr12 10630324 10635692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1533 1 627 Acyl Lipid Metabolism Gene Families AT3G06650 90.271 0.0 1125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1533 K01648 - tcc:18603655 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1533 12 10630324 10635692 Sto12g1533 12 10630324 10635692 ECH