Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1525 ATGCTTTCAACCTTCTTTAGTAATGATCATAATGAGGATGATAAGATTTACTGGAAACATGCAAAGGACGGtaacttttcaataaaatcTGCTTATGCTTTAATCACTATGCCCAAAACAAGAGCTAATGCCTCTATGTCTTGGATCTGGAAGCCCTTTTGTAATCCCCGTCAAAATTTCTTCTTATGGAGAGCTTTCCTTAATGCTCTCCCTACTTCCCAAAAAATCAATAACATCCTTCGAACCATACCTGCTTCTTGTAACCTTTGTAATCTCAACCAAGAAGACTTGTTACACTCCCTTAGGGACTGTCCTTCAATATCATGCATTTGGAATCAGTTCCCTCTTCCCCCGAACTTCTTTTCCCTCCCTCTAGACCATTGGCTTAAGACTAATTGTAGCAATAAAATCAACTCCTTCAAAAACCTTCCTTGGAACACCTTTTTTATCTACATTTACTACTACATCTGGAATAATAGAAACCAGCATTTGTTTAGAAGTAAACCTCATCTTCCCCTTTCCATTATTAAATCTGCCATTAATAATGCCAATGAATTCCATTTTTTAGCTAAGCCCACGCCTCCCATTGCTCACACCAACTACCAATTGGTATATTGGATGGAACCCCAGGAACATTATCATAAACTAAATATTGATGGCTCGGCTTCAAACATGAATTTGGGAGCAGGTGGTATCATTAGAAATGCACAAGGATCTCACATCATTAGCTTCAACCACTTCATTGGAAGGGGAGATTCAATTAAAGCAGAACTATGGGCTCTCCAAACAAGGCTCTCCATTGCGATCAATCTTAACATAAAATACATTGAGATCGAAACCAACGCCCTCTCTGTCATTTATCTTATAAAGAACTTAAATCTGTGTCACCTTCACCCCTTCTTTTGTGTTATTCAAAACTGCAGGCGCTTCCTTTCCACCTTTGAGGACTACAAGCTCTTGCACATCTATAGAGAGGCTAATGGATGTGCAGACCTTTTGGCAAAGCATGCCCATATTTCACAGTGCCAGAAAAGCACCTTTTTGGAGCCTCCACCTTTCCTGCATCCCCAGCTTCTGAAGAACTCTCTGCATATCGTTCTCCGACCAGCATTCGACGTGATCGACACCGACCGCGATGGCAAGATAAGCCGCAGCGATCTCCGGTCATTATTCCACGCGGCGGACGAGGACGACGACGTGGTGGTGGAGTCCATGATGGTGGCGGCGGACACAAACGGGGACGGGTTCGTGGAGTACGAGGAGTTCGAGCGCGTGGTGGAGACGGCGACCGGCGCGTCCGGTGCGCCGGGTATTATGGAGGAGGCGTTCAGAGTGATGGACAAGGACGGCGACGGAAAACTTGGCCGTGAAGATTTAAAGAGCTTTATGGGCTGGGCCGGGCTAGCCGTCACGGAAGACGATATCGAGGATATGATCGGAGTGGGCGGCGGCGGTGGCGTAAGCTTCCATGGCTTCATTCGGATTTTGGGACTTTGA 1497 0.4509 MLSTFFSNDHNEDDKIYWKHAKDGNFSIKSAYALITMPKTRANASMSWIWKPFCNPRQNFFLWRAFLNALPTSQKINNILRTIPASCNLCNLNQEDLLHSLRDCPSISCIWNQFPLPPNFFSLPLDHWLKTNCSNKINSFKNLPWNTFFIYIYYYIWNNRNQHLFRSKPHLPLSIIKSAINNANEFHFLAKPTPPIAHTNYQLVYWMEPQEHYHKLNIDGSASNMNLGAGGIIRNAQGSHIISFNHFIGRGDSIKAELWALQTRLSIAINLNIKYIEIETNALSVIYLIKNLNLCHLHPFFCVIQNCRRFLSTFEDYKLLHIYREANGCADLLAKHAHISQCQKSTFLEPPPFLHPQLLKNSLHIVLRPAFDVIDTDRDGKISRSDLRSLFHAADEDDDVVVESMMVAADTNGDGFVEYEEFERVVETATGASGAPGIMEEAFRVMDKDGDGKLGREDLKSFMGWAGLAVTEDDIEDMIGVGGGGGVSFHGFIRILGL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1525 498 Gene3D - 335 432 - -
Sto12g1525 498 CDD EFh 440 479 IPR002048 GO:0005509
Sto12g1525 498 Pfam zinc-binding in reverse transcriptase 26 111 IPR026960 -
Sto12g1525 498 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Sto12g1525 498 CDD RNase_H_like 216 335 IPR044730 -
Sto12g1525 498 PANTHER CALCIUM-BINDING PROTEIN CP1 366 497 - -
Sto12g1525 498 PANTHER TROPONIN 366 497 - -
Sto12g1525 498 Pfam EF-hand domain pair 366 426 IPR002048 GO:0005509
Sto12g1525 498 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Sto12g1525 498 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Sto12g1525 498 SUPERFAMILY Ribonuclease H-like 213 335 IPR012337 -
Sto12g1525 498 Gene3D - 438 497 - -
Sto12g1525 498 Gene3D - 214 334 IPR036397 GO:0003676
Sto12g1525 498 CDD EFh 367 422 IPR002048 GO:0005509
Sto12g1525 498 ProSiteProfiles EF-hand calcium-binding domain profile. 370 396 IPR002048 GO:0005509
Sto12g1525 498 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Sto12g1525 498 SUPERFAMILY EF-hand 367 496 IPR011992 -
Sto12g1525 498 SMART efh_1 366 394 IPR002048 GO:0005509
Sto12g1525 498 SMART efh_1 401 429 IPR002048 GO:0005509
Sto12g1525 498 SMART efh_1 438 466 IPR002048 GO:0005509
Sto12g1525 498 Pfam Reverse transcriptase-like 217 337 IPR002156 GO:0003676|GO:0004523
Sto12g1525 498 Pfam EF hand 440 463 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1525 Sto-Chr12 10570117 10573341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1525 367 497 EF-hand Containing Proteins AT5G49480 49.645 1.13e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1525 - - qsu:112040772 186.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1525 12 10570117 10573341 Sto12g1525 12 10570117 10573341 ECH