Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1439 ATGTCCAAGAAAGATTTAGCCCTACAGCAAGCTCTGGATCAGATCACTTCTGCGCATGGAAAGGGATCTATCATGTGGCTTGGTCGCTCTGTCTCTCCTAAACATGTTCCAGTAGTGTCAACTGGTTCTTTTGCTCTTGATATAGCACTAGGAGTTGGTGGACTTCCAAAGGGACGTGTTGTTGAAGTATATGGTCCAGAAGCTTCTGGGAAAACCACTCTTGCTTTACATGTGATTGCTGAAGCACAGAAGCAAGGAgGCTATTGTGTTTTTGTTGATGCTGAACATTCACTTGATAAAGCACTTGCGGAGTCTATTGGTGTAAATACTCAGAACTTGCTTGTCTCTCAACCTGATTGTGGTGAACAAGCACTTAGCCTTGTTGATACCTTAATCCGGAGCGGTTCAATTGATGTAATTGTTGTTGACAGTGTAGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCCAGGTTGATGAGCCAGGCTCTTCGGAAACTGTGCCACTCATTGTCAACGTCACAttgtttattgatttttttaaaccaGGTAAGGTCAAAGCTTTCTACTTTTGGGGGGTTTGGTGGGCCAACTGAAGTTACTTGTGGTGGCAATGCATTGAAATTCTATGCTTCTGTTCGGCTAAATATCAGGCGAACAGCATTTATTAAGAAGGGAGAAGAGACTTTAGGAAGTCAGGTTCTTGTCAAGGTTGTGAAGAACAAACTTGCCCCTCCATTTAAAACTGCACAGTTTGAGCTTGAGTTTGGCAAGGGTATAAGTAAAGAAGCAGAGATCTTGGATTTGAGCTTAAAACACAAATTCATCTCAAAATCTGGTTCATTTTACAACCACAAAGGTCAGAATTTCCATGGTAAGGATGCTCTTAAGAAGTTCCTGGCTGAGAATCCTAGTGCGCAAGAAGAACTTATTCTGAAGCTGAGGGAGAAGCTTCTTAATTCCGATACGGAAGGTGAGCTGACTGACGGAGATGTTACAGAAGTTGTGTCGGCTGATTCTACTGATGAAGAAGTAGCTGCTGCTGCAGAAGCATGA 1086 0.4273 MSKKDLALQQALDQITSAHGKGSIMWLGRSVSPKHVPVVSTGSFALDIALGVGGLPKGRVVEVYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHSLDKALAESIGVNTQNLLVSQPDCGEQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSTSHCLLIFLNQVRSKLSTFGGFGGPTEVTCGGNALKFYASVRLNIRRTAFIKKGEETLGSQVLVKVVKNKLAPPFKTAQFELEFGKGISKEAEILDLSLKHKFISKSGSFYNHKGQNFHGKDALKKFLAENPSAQEELILKLREKLLNSDTEGELTDGDVTEVVSADSTDEEVAAAAEA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1439 361 Gene3D - 33 334 IPR027417 -
Sto12g1439 361 PANTHER RECA 1 351 IPR013765 GO:0003697|GO:0005524|GO:0006281
Sto12g1439 361 TIGRFAM tigrfam_recA: protein RecA 4 325 IPR013765 GO:0003697|GO:0005524|GO:0006281
Sto12g1439 361 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 351 - -
Sto12g1439 361 Hamap Protein RecA [recA]. 4 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Sto12g1439 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 270 IPR027417 -
Sto12g1439 361 CDD recA 3 330 IPR013765 GO:0003697|GO:0005524|GO:0006281
Sto12g1439 361 Coils Coil 356 361 - -
Sto12g1439 361 SUPERFAMILY RecA protein, C-terminal domain 271 327 IPR023400 -
Sto12g1439 361 Pfam recA bacterial DNA recombination protein 7 271 IPR013765 GO:0003697|GO:0005524|GO:0006281
Sto12g1439 361 PRINTS RecA protein signature 93 122 IPR013765 GO:0003697|GO:0005524|GO:0006281
Sto12g1439 361 PRINTS RecA protein signature 127 156 IPR013765 GO:0003697|GO:0005524|GO:0006281
Sto12g1439 361 PRINTS RecA protein signature 165 194 IPR013765 GO:0003697|GO:0005524|GO:0006281
Sto12g1439 361 PRINTS RecA protein signature 213 241 IPR013765 GO:0003697|GO:0005524|GO:0006281
Sto12g1439 361 PRINTS RecA protein signature 246 275 IPR013765 GO:0003697|GO:0005524|GO:0006281
Sto12g1439 361 PRINTS RecA protein signature 299 316 IPR013765 GO:0003697|GO:0005524|GO:0006281
Sto12g1439 361 SMART AAA_5 57 237 IPR003593 -
Sto12g1439 361 MobiDBLite consensus disorder prediction 334 361 - -
Sto12g1439 361 ProSiteProfiles RecA family profile 1. 35 194 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Sto12g1439 361 ProSiteProfiles RecA family profile 2. 204 275 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Sto12g1439 361 ProSitePatterns recA signature. 216 224 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1439 Sto-Chr12 9822190 9826114 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1439 K03553 - tcc:18588379 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1439 12 9822190 9826114 Sto12g1439 12 9822190 9826114 ECH