Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1431 ATGGAGACTCCACAGCAAGGAGGAgtggtgaagaagaaggagacgaGGGGTCGGAAGCCCAAGCCCAAGGACGACAAGAAGGAcgagcagcagcagcagcagcatgGCAAGACGGTCAAGGAGGGCAAGAAATCTCACCCACCTCCCTCCGTCGACGACAAGTACACCCAATGGAAGTCTCTCGTCCCTGTCCTCTATGACTGGCTCGCTAATCACAACCTCGTTTGGCCCTCTCTCTCTTGCCgGTGGGGTCCTCAGCTTGAGCAAGCTACTTACAAGAATCGCCAGCGTCTCTACCTTTCTGAGCAGGTCAGtctctttcttACTGATGGTAGTGTTCCAAATACTCTGGTCATTGCAAACTGTGAGGTTGTGAAGCCTAGGGTTGCAGCTGCAGAACATATTTCGCAGTTTAATGAAGAGGCACGCTCACCATTTGTGAAGAAGTTTAAGACCATCATACATCCGGGAGAGGTTAACAGAATTAGGGAATTGCCAACAAATTCTAAGATAGTGGCTACACATACAGATAGTCCTGATGTCCTCATTTGGGACGTTGAATCTCAGCCCAATCGTCATGCTGTCCTTGGAGCTACAAATTCTCGTCCAGATTTGATACTGACTGGGCACCAAGATAATGCTGAATTTGCCCTTGCTATGTGCCCAACTGAACCCTATGTCCTTTCCGGAGGAAAGGACAAATCTGTGGTTTTGTGGAGTATTCAGGACCATATAACATCTACTGCCACAGACCCAAAATCTGGTGAGTCAAATGCCAAACAGACCTCAAAATCTGGGGAAGGCAATGACAAAGTTGCTGATGGGCCATCTGTTGGACCACGGGGCATCTTTCATGGCCATGAGGATACTGTTGAAGATGTGACCTTTTGCCCTTTTAGTGCACAGGAGTTTTGTAGTGTTGGGGATGATTCTTGTCTCATATTATGGGATGCACGTGTTGGCACCAGTCCTGTGGTTAAGGTTGAAAAAGCTCATAATGCTGATCTTCATTGTGTTGACTGGAATCCCAATGATGTTAATCTTATTCTAACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGACCGGCGTAATCTCACCTCTAATGGAATTGGGTCGCCTATCCATAAATTTGAGAGTCACAAAGCTGCTGTTCTGTGTGTTCAGTGGTCTCCCGACAAATCATCTGTATTTGGAAGTTCTGCAGAAGATGGTCTCTTAAACATTTGGGATTATGAGAAGTGTTCTTTAATGCAGATTGGTAAGCGAGTAGAGCGATCTGGAAAATCACATAGTTCTCCGGGTTTGTTGTTCCAACATGCTGGCCATAGAGACAAGGTTGTTGACTTTCATTGGAATGCATATGACCCGTGGACTATTGTTAGTGTGTCTGACGACTGTGATAGTACTGGTGGAGGGGGAACATTGCAGATATGGCGGATGAGCGATTTGATCTACCGACCTGAAGAGGAGGTCCTGGCAGAGTTAGAGAAATTTAAGTCTCATGTGGTGGAATGTGCTTCAAAGTCTGAGAAGTGA 1539 0.4464 METPQQGGVVKKKETRGRKPKPKDDKKDEQQQQQHGKTVKEGKKSHPPPSVDDKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQVSLFLTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRELPTNSKIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSTATDPKSGESNAKQTSKSGEGNDKVADGPSVGPRGIFHGHEDTVEDVTFCPFSAQEFCSVGDDSCLILWDARVGTSPVVKVEKAHNADLHCVDWNPNDVNLILTGSADNSVRMFDRRNLTSNGIGSPIHKFESHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKCSLMQIGKRVERSGKSHSSPGLLFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCDSTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHVVECASKSEK 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1431 512 SUPERFAMILY WD40 repeat-like 151 483 IPR036322 GO:0005515
Sto12g1431 512 Pfam WD domain, G-beta repeat 205 240 IPR001680 GO:0005515
Sto12g1431 512 Pfam WD domain, G-beta repeat 282 317 IPR001680 GO:0005515
Sto12g1431 512 Pfam WD domain, G-beta repeat 372 411 IPR001680 GO:0005515
Sto12g1431 512 Pfam WD domain, G-beta repeat 330 362 IPR001680 GO:0005515
Sto12g1431 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 326 IPR001680 GO:0005515
Sto12g1431 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 420 IPR001680 GO:0005515
Sto12g1431 512 SMART WD40_4 322 362 IPR001680 GO:0005515
Sto12g1431 512 SMART WD40_4 433 480 IPR001680 GO:0005515
Sto12g1431 512 SMART WD40_4 146 185 IPR001680 GO:0005515
Sto12g1431 512 SMART WD40_4 371 411 IPR001680 GO:0005515
Sto12g1431 512 SMART WD40_4 277 317 IPR001680 GO:0005515
Sto12g1431 512 SMART WD40_4 200 240 IPR001680 GO:0005515
Sto12g1431 512 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 53 124 IPR022052 -
Sto12g1431 512 MobiDBLite consensus disorder prediction 7 50 - -
Sto12g1431 512 Gene3D - 23 498 IPR015943 GO:0005515
Sto12g1431 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 329 362 IPR001680 GO:0005515
Sto12g1431 512 PANTHER WD40 REPEAT FAMILY 24 509 - -
Sto12g1431 512 MobiDBLite consensus disorder prediction 247 268 - -
Sto12g1431 512 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 24 509 - -
Sto12g1431 512 MobiDBLite consensus disorder prediction 247 285 - -
Sto12g1431 512 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 329 362 - -
Sto12g1431 512 MobiDBLite consensus disorder prediction 1 54 - -
Sto12g1431 512 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 378 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1431 Sto-Chr12 9744960 9750603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1431 227 421 Miscellaneous Gene Families AT5G08390 25.604 8.86e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1431 K10752 - gmx:100779302 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1431 12 9744960 9750603 Sto12g1431 12 9744960 9750603 ECH