Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1422 ATGGTTCTTATgagaaaaatgacaaaaaagAGTAATTATGAGCTTCTTCTTCTAATAGGCTTTGTCCTAATTACCATCTCCTATGTGGTGGCTGCTGCCAACTTCAACCAAGACTTTGAAGTCACATGGGGCGATGGCCGCGCCAAGATCGTCGACGGCGGCCgcctcctctccctctccctcgaCAAGGCCTCCGGCTCCGGATTTCGCTCCAAAAACGAATACCTCTTCGGAAAGATTGACATGCAAATCAAGCTTGTGCCCGGCAACTCCGCCGGCACCGTCACTGCCTATTATGTATCTTCAGTGGGGTCGGCACATGATGAAATAGACTTTGAATTTCTGGGAAACCTAAGTGGAGATCCATATATTCTTCATACGAACATATTCACACAAGGCAAAGGAAACAGAGAGCAGCAATTCTACTTGTGGTTCGATCCCACTAAGGATTTCCACACTTATTCTATTCTCTGGAATCCTCAAACTATCATATTGTATGTGGATGGGACACCAATAAGGGAGTTCAAGAACTTAGAATCAAGAGGGATTCCATTCCCCAAGAGCCAAGCAATGAGGATATACTCAAGCCTTTGGGATGCTGAAGATTGGGCCACAAGAGGAGGTCTTGTGAAGACTGATTGGTCTCAAGCTCCTTTCACTGCCTCTTATAGGGacttcaaccttcaagcttgTGTCTTttcaacttcttcttcttgctcttcttcatcttctgaCCAATCATGGCTGAAACAATCACTAGATGCCACTGGGGAAGCCAGAATGAAATGGGTGAAGAAGAACTATATGATTTATAACTATTGCACTGATACTAAGAGGTTCCCTCAAGGCTTCCCTCCTGAATGCTCTCTCTCATGA 876 0.4041 MVLMRKMTKKSNYELLLLIGFVLITISYVVAAANFNQDFEVTWGDGRAKIVDGGRLLSLSLDKASGSGFRSKNEYLFGKIDMQIKLVPGNSAGTVTAYYVSSVGSAHDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTKDFHTYSILWNPQTIILYVDGTPIREFKNLESRGIPFPKSQAMRIYSSLWDAEDWATRGGLVKTDWSQAPFTASYRDFNLQACVFSTSSSCSSSSSDQSWLKQSLDATGEARMKWVKKNYMIYNYCTDTKRFPQGFPPECSLS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1422 291 PRINTS Glycosyl hydrolase family 16 signature 67 85 IPR008264 GO:0004553|GO:0005975
Sto12g1422 291 PRINTS Glycosyl hydrolase family 16 signature 125 138 IPR008264 GO:0004553|GO:0005975
Sto12g1422 291 PRINTS Glycosyl hydrolase family 16 signature 143 160 IPR008264 GO:0004553|GO:0005975
Sto12g1422 291 Gene3D - 21 291 - -
Sto12g1422 291 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 29 223 IPR000757 GO:0004553|GO:0005975
Sto12g1422 291 CDD GH16_XET 31 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
Sto12g1422 291 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 14 290 IPR044791 GO:0004553
Sto12g1422 291 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 14 290 - -
Sto12g1422 291 PIRSF EndGlu_transf 2 291 IPR016455 GO:0010411|GO:0016762|GO:0042546
Sto12g1422 291 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 244 288 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Sto12g1422 291 Pfam Glycosyl hydrolases family 16 36 215 IPR000757 GO:0004553|GO:0005975
Sto12g1422 291 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 290 IPR013320 -
Sto12g1422 291 ProSitePatterns Glycosyl hydrolases family 16 active sites. 109 119 IPR008263 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1422 Sto-Chr12 9666495 9669242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1422 7 288 Glycoside Hydrolase AT4G25810 70.629 1.09e-149 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1422 K14504 - qsu:112034223 463.381