Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1390 ATGCGATCAGGAGGTTGTGCATTACAGCAGACCCTCACGTCGGAGGCTGCTTCGGTGTTGAAGCACTCTCTGGGCTTGGCTCGGAGGAGGGGCCATGCCCAGGTCACTCCACTTCACGTGGCAGCAACCTTGCTTAGCCTTAGAGCTAGCTCCTTCAGAAGGGCTTGTCTCAAATCTCAccctcttcatcatcatcatcaccaccaAACTTCTCCACATTCTTCACAACATCATCATCCTCTCCAATATTGTAGAGCCCTTGAACTTTGCTTCAATGTGGCTCTCAATAGGCTCCCAACCACACCAACCCCAAATTTGCTTCACACTCAGCAGCCTTCTCTTTCTAATGCTCTAATTGCTGCTTTGAAAAGAGCTCAGGCTCACCAGAGAAGGGGCTGCATTGAGCAGCAGAACCAACAGCCACTTCTTACCATAAAGGTTGAGCTTGAACAACTTGTTATATCTATTCTGGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGGTTCTCCAGTACTGCTGTGAAGAGCAATATAGAGGACTCTTCACCCCCTTGTTCTGTTTTCCAGTGTTACAGCAGCTCTGGTGGTGTCTTTTCTTCTCCTTGCTCTCCTTCTCCCAGTGAAAACCAGAGAGAAATTACCATCAATTCCAACAGTTTTAGGCAGCCTCATTTCTACACTTCTTCTGAGTACTACAATCCACTTCTTTTCTCTCCTCAGAAGAAAACCCCAGTGTACCCTATCACTGAATCAACTTCATCCAAGGAAGATATCAAGTTGGTTCTGGATGTCTTgttgaggaggaagaagaagaacactGTGATAGTTGGGGACTCTCTATCCATCACTGAAGGCCTTGTGGGAGAGCTGATGGGAAGGTTAGACAGAGGAGAGGTTCCCAATGAACTAAAGTCAacccatttcatcaagtttcaatTTACACCAGTTTCTTTGAGGTTTATGAAAAAAGATGAAGTTGAGATGAACCTATTGGAGCTAAAACGGAAGGTGGATTCTGTTGCGTCAGGAGGAGGGGGAGCCATATTTTACTTTGGAGATCTAAAATGGATTGTGGAGGCAGCTCTCTTCAGTGAAAAAGACGGGGGAGGAAAAGTCTACGATTATAACCCAGTGGATCACATAGTTGCAGAAATAGGAAAGTTGTTCTCTGACTACGGAAGCTCATCAAATGCTAAGATATGGCTGATGGCTACTGCAAGTTACCAAACATACATGAGGTGTCAAATAAGGCAGCCCGCTCTTGAGACCCAGTGGTCTCTTCAAGCAGTTCTGGTTCCTTCAGGTGGACTTGGCTTGAGTCTTCATGCTTCCAGTGTCCTTGATTCAAAGATGATAAACTCTCAAAACCCATCTCATATGCTGGAAAAGAAGCTCTTTAGTAACATGGAGGAGCAAGATAAGCTCACATGCTGTGAAGAATGTGCCTCTAACTATGAAAAAGAAGCTCAATTGTTCAAACCAGGCCAGACAAAACTCTTACCATCCTGGCTTCAATCACATAGCATCGAAGCCCATCAGAAGGAGGAATTAACGCAATTGAGAAGAAAGTGGAATAGATTATGCCACTATCTCCACCAAGGCAAGAATTCTCAGAATCAATGGAACAACATTTTATTCAGCAATAACAGTTCAAATGGGAAGATCTATCCTTGTAATTCTTCATACCCCTCGTGGCCAAAACAAGGAAGTGTCTTCCCAGATTCAAGTTCTATATCTTTTGTAGACTCTACCACTACTAAACCTACTCATACCAGCTCTAATCTTGTACCTCGAATTCGATGTCAACAATCATGCACTATTGAGTTCAATTTCAGCAATGGAACTCAGAAACGGCAGCAAACGACAACAGAAGAGCCAAGCTTGGATTCTCTTAAGGGCTTGGAAGGTAAAGAAGAGAAGATTACTCTTGCTCTAGGGAATTCCCAATTCGGTGGTTCAGAGCAAGGGGAGGAGAAAAGTATAACTGATACAGCACAACTAAGATCTCATGTTTGTAAAATATTGCAGGAAAATGTTCCATGGCATTCTGAAACAATCCCTTCAATAGTGGAGGCCTTGATTGATTCCAAATCAGAAAAGGAAACCACAACTTGGTTAATTTTGCAGGGCAATGACTTTGTAGGAAAAAGAAGGTTGGCTCACGCAATTACAGAATCATTCTTTGGCTCAACTCATAATATGCTTCTTCAATTGGACATGAAGAAAAAAGACACTCTAGTAGCTTCATTCTCTGAAAGGTTGACCAAAGCATTGAAAGCCCATGAAAAACTCGTCATCTTGATAGAGAACATTGATTTTGCTGATACCCATTTCAAGAAACTCCTCGCAGATGGTTATGAAACAGGAAAGTTTGGCCAATCAATAATCATAATGACAAATTGTGGCTCAACAAGCAACAACAACAAAGAAAAGAATCAGGACTTGGTGATGCAACTAACACTACAGATCAATGATGAAACACATTGCGTGGGCCAAAAGCGAAAGTCAGAATTCGATCTCTTTCCCAAAATCAAAAGCCCTAGAATATTATTGGAAGAGAAGAAAGGAGAATCTAACCGAAAGAGAGATTTCTCGAGACAGTCAAGCTTCAACACCCTTGATCTGAACGTAAGAGCGGATGAACAAGAAGCCGACGATGATGGCGAAGGAGAAAGCAGCAGTAGCAGTAGCAGCAGCAGCCCCATTTCCAGTGACTTGACACGGGAAACCCTACTCGACCCTTTAAACCCTAATGGGTTTCTCGATTCAATCGAGAAGAGATTCGAGTTGAATAGAAACCCAGCTTGGGACAGGAAGATGGCAGAGTTGTTTACTTCCAAGATCAAAGGGTCGTTTGAAGAAATCAAAGGGAAGCAGAATTTAGGGAAACTGAGTGTAGAAGAGAAGGTGATAGAGGAAATGATTGGTGGGTGTGGGGGTTTTACTAACTCTGTGTTTGAGAAATGGCTGAAAGACATTTTTCAAAGAAGCTTAGAAAAAGTTAACATTGTGGGGAAGGAaaagggtataggttttagacTTTGTTGGGGAGGAATTGGTAAAGGAAATGGTAAAGGTAAAGGAAAAGGTATAGGTGgggaaattagggttttggatagtGAAGAAGAAGGGTTCAAGAGTTCATGTCTGCCCAAGAATATCCAAGTTAACTACTACATGGATTGA 3192 0.4129 MRSGGCALQQTLTSEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSFRRACLKSHPLHHHHHHQTSPHSSQHHHPLQYCRALELCFNVALNRLPTTPTPNLLHTQQPSLSNALIAALKRAQAHQRRGCIEQQNQQPLLTIKVELEQLVISILDDPSVSRVMREAGFSSTAVKSNIEDSSPPCSVFQCYSSSGGVFSSPCSPSPSENQREITINSNSFRQPHFYTSSEYYNPLLFSPQKKTPVYPITESTSSKEDIKLVLDVLLRRKKKNTVIVGDSLSITEGLVGELMGRLDRGEVPNELKSTHFIKFQFTPVSLRFMKKDEVEMNLLELKRKVDSVASGGGGAIFYFGDLKWIVEAALFSEKDGGGKVYDYNPVDHIVAEIGKLFSDYGSSSNAKIWLMATASYQTYMRCQIRQPALETQWSLQAVLVPSGGLGLSLHASSVLDSKMINSQNPSHMLEKKLFSNMEEQDKLTCCEECASNYEKEAQLFKPGQTKLLPSWLQSHSIEAHQKEELTQLRRKWNRLCHYLHQGKNSQNQWNNILFSNNSSNGKIYPCNSSYPSWPKQGSVFPDSSSISFVDSTTTKPTHTSSNLVPRIRCQQSCTIEFNFSNGTQKRQQTTTEEPSLDSLKGLEGKEEKITLALGNSQFGGSEQGEEKSITDTAQLRSHVCKILQENVPWHSETIPSIVEALIDSKSEKETTTWLILQGNDFVGKRRLAHAITESFFGSTHNMLLQLDMKKKDTLVASFSERLTKALKAHEKLVILIENIDFADTHFKKLLADGYETGKFGQSIIIMTNCGSTSNNNKEKNQDLVMQLTLQINDETHCVGQKRKSEFDLFPKIKSPRILLEEKKGESNRKRDFSRQSSFNTLDLNVRADEQEADDDGEGESSSSSSSSSPISSDLTRETLLDPLNPNGFLDSIEKRFELNRNPAWDRKMAELFTSKIKGSFEEIKGKQNLGKLSVEEKVIEEMIGGCGGFTNSVFEKWLKDIFQRSLEKVNIVGKEKGIGFRLCWGGIGKGNGKGKGKGIGGEIRVLDSEEEGFKSSCLPKNIQVNYYMD 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1390 1063 ProSiteProfiles Clp repeat (R) domain profile. 8 186 IPR004176 -
Sto12g1390 1063 SUPERFAMILY Double Clp-N motif 12 181 IPR036628 -
Sto12g1390 1063 MobiDBLite consensus disorder prediction 616 635 - -
Sto12g1390 1063 MobiDBLite consensus disorder prediction 893 911 - -
Sto12g1390 1063 Pfam Clp amino terminal domain, pathogenicity island component 26 46 IPR004176 -
Sto12g1390 1063 Pfam Clp amino terminal domain, pathogenicity island component 147 182 IPR004176 -
Sto12g1390 1063 MobiDBLite consensus disorder prediction 877 911 - -
Sto12g1390 1063 MobiDBLite consensus disorder prediction 616 630 - -
Sto12g1390 1063 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1022 - -
Sto12g1390 1063 Gene3D - 9 184 IPR036628 -
Sto12g1390 1063 Gene3D - 655 843 IPR027417 -
Sto12g1390 1063 PANTHER PROTEIN SMAX1-LIKE 5 1 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1390 Sto-Chr12 9347647 9351272 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1390 - - gmx:102660146 1243.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1390 12 9347647 9351272 Sto12g1390 12 9347647 9351272 ECH