Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1384 ATGGCCACCGCCGGAGCAACCGGGAATGGCACCAACGCCGCGTCGGAACCCCACCCACAAGTCGCCGCCGTCAATGCCTCCGCCGCCGAGCTAGCTACTATCACCACTAACACCGAGGCTACTGGTGCGGATGCCACCCAGGCCAACCCGTCAACTGAGGAGCCCGAATCTGAGCCAGCTCACATAGCTGAAGCTGCCTCCGATCAGACCGCCACTTCCACTCCGCCCGAGAAGAGATGGCCTGGCTGGCCTGGGAATTGTGTGTTTCGGCTAATTGTGCCAGTCCTCAAGGTGGGCAGTATTATCGGTCGCAAGGGCGAGCTCATTAAGAAGATGTGCGAGGAGACTCGAGCGCGCATTCGCGTTCTTGACGGTGCCGTGGGCACTCCTGATCGAATTGTACTCATTTCAGGTAAGGAAGAGCCAGAGGCACCTCTTTCCCCTGCAATGGATGCTGCAATAAGGGTATTTAAACGTGTCTATGGGTTATCTGAAAGTGATGGTGAGAATAAAGCATTAGGACCTGCTGAGGCTGCATATTGTTCAGTTCGATTATTAGTGGCATCAACACAGGCAATCAATTTGATTGGAAAGCAAGGTTCATTAATTAAATCTATACAGGAGAACACTGGTGCTTCTGCTCGAGTATTGTCAGGAGATGAGGTGCCATTTTATGCTGCTGCGGATGAGAGGATTGTTGAACTGCAGGGAGAAGCCTTTAAGGTCCTTAAGGCTCTGGAAGCAGTAGTTGGCCACCTGAGGAAGTTCTTGGTTGATCATAGTGTTCTTCCCCTTTTTGAGAAAAAAACTTACAATTCAACAATCTCACAAGACCGCCAAGCAGATACCTGGGCTGACAAGTCATCCATGCATACTGCTTCACAAACTAGCATTAGTGCTGATATTCCTCTGTCAGCAAAAAGGGATACTCTTTTCGCTGACCGTGAAAGTCATTTGGACACACAACTCGCCTCGTCTGCAGTGTCACTCTATGGGCAGGATTCTTCACTTTCTGGTGTTCGTTCTTCAGCACTTAGTCGTGCCGGTGCTCCCATTGTTACTACGGTGATACAAACAATGCAAATACCACTATCCTATGCTGAGGACATCATTGGGATTCAAGGGACTAATATTGCTTACATTCGCCGTACTAGTGGAGCCATATTGACTGTGCAGGAGAGCAGGGTACCTGATGAAATTATTGTGGAAATCAAAGGTACCTCAACACAGGTTCAATTGGCGCAACAATTGATTCAGGAAGTTATAAGCAATCACAAAGAACCAGTCTCTAGCAGTTACGGGAGATTAGATGGAGGTCTGAGGTCGTCATACTCTCAGCTTGGGGGTAGTACATCATATTCCTCATCTTCTTTGCCCTCACAACCCTACACAGGGTATGGATCTTCTGGTTTAGGAGGCTATAGTACTTTCAGACTTTGA 1440 0.4875 MATAGATGNGTNAASEPHPQVAAVNASAAELATITTNTEATGADATQANPSTEEPESEPAHIAEAASDQTATSTPPEKRWPGWPGNCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTPDRIVLISGKEEPEAPLSPAMDAAIRVFKRVYGLSESDGENKALGPAEAAYCSVRLLVASTQAINLIGKQGSLIKSIQENTGASARVLSGDEVPFYAAADERIVELQGEAFKVLKALEAVVGHLRKFLVDHSVLPLFEKKTYNSTISQDRQADTWADKSSMHTASQTSISADIPLSAKRDTLFADRESHLDTQLASSAVSLYGQDSSLSGVRSSALSRAGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIAYIRRTSGAILTVQESRVPDEIIVEIKGTSTQVQLAQQLIQEVISNHKEPVSSSYGRLDGGLRSSYSQLGGSTSYSSSSLPSQPYTGYGSSGLGGYSTFRL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1384 479 Pfam KH domain 89 141 IPR004088 GO:0003723
Sto12g1384 479 Pfam KH domain 183 249 IPR004088 GO:0003723
Sto12g1384 479 Pfam KH domain 358 420 IPR004088 GO:0003723
Sto12g1384 479 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 178 261 IPR036612 GO:0003723
Sto12g1384 479 MobiDBLite consensus disorder prediction 1 80 - -
Sto12g1384 479 SMART kh_6 85 158 IPR004087 GO:0003676
Sto12g1384 479 SMART kh_6 354 423 IPR004087 GO:0003676
Sto12g1384 479 SMART kh_6 179 254 IPR004087 GO:0003676
Sto12g1384 479 CDD KH-I 357 419 - -
Sto12g1384 479 Gene3D - 86 257 - -
Sto12g1384 479 MobiDBLite consensus disorder prediction 1 18 - -
Sto12g1384 479 CDD PCBP_like_KH 182 250 - -
Sto12g1384 479 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 352 424 IPR036612 GO:0003723
Sto12g1384 479 CDD PCBP_like_KH 88 157 - -
Sto12g1384 479 Gene3D K Homology domain, type 1 354 428 IPR036612 GO:0003723
Sto12g1384 479 ProSiteProfiles Type-1 KH domain profile. 355 418 - -
Sto12g1384 479 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 75 465 - -
Sto12g1384 479 MobiDBLite consensus disorder prediction 29 54 - -
Sto12g1384 479 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 79 141 IPR036612 GO:0003723
Sto12g1384 479 ProSiteProfiles Type-1 KH domain profile. 180 249 - -
Sto12g1384 479 ProSiteProfiles Type-1 KH domain profile. 86 153 - -
Sto12g1384 479 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 75 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1384 Sto-Chr12 9262498 9267726 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1384 K21444 - gmx:100815466 613.224