Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1352 ATGGAAGGTTCATCGGAACCTCCGCCTCCCGCCGCCGGAGAAACCTTCAGCAAGAATGCATTGAAGCGTGAACTCAGGAACAAACAGAGAGAAGAGGAAAGACGGCtcaaggaggaggagaaggccAGAAAGGCAACTGAAATGCAAAGTGCCCAACCTAAGAGACACGCATCTGTTAAGGACGATGAGGATATGGAACCAACACAATACCACGAGAACAGACTAAAATATCTTGCAGCTCAGAAGTCAGACAGGAATGAACGGTATCCTCACAAATTTTCAGTTTCCATATCTATCAAAGAATACATTGAAAAATATGGAGGCTTAAGTGATGGAGAGCATCTTGAAAAAATCATTGTTTCTTTAGCAGGTCGGATCATGCACAAACGCTCTTCAGGTGCAAAGCTAGTGTTTTATGACCTGCATGGTGTTGGTTTCAAAGTCCAGGTTATAGCTGATGCAAGGAACTCTGACTTGGATGAGACTGAATTTTCCAAACACCATTCTAATGTGAAGCGTGGTGATATTATCGGCATTACTGGATTTCCAGGGAAAAGTAAGAAGGGAGAGCTTAGTATTTTCCCCAAGACTTTCACAGTGTTGTCTCATTGTCTACATATGATGCCAAGGCAAAAATCTGCGGCTGCTGCTGATACTGCAAATGTGAAGAAAAATAGATGGGTACCAGGAAGCATTAGGAACCCTGAAACATACATTTTAAAGGATCAGgaaACGAGATATCGTTTACGTCATttggatttgatgctcaatCCAGAGGTTCGAGAAATATTTATGACAAGGTCTAGAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTCGATTTCCTGGAGGTTGAAACACCAATGATGAACATGATTGCTGGTGGAGCAGCAGCCCGTCCATTTATAACTCATCACAACGAACTTAACATGAGGTTATACATGCGAATTGCACCAGAACTCTACCTTAAGAAGCTCGTTGTTGGTGGGCTGGATCGTGTTTATGAAATTGGAAAACAACTTAGAAACGAGGGTATTGATTTGACTCATAATCCTGAGTTCACTACTTGTGAATTCTATATGGCTTATAAGGACTATAATGACTTAATTGAGATTACAGAGGAAATGTTGAGTGGAATGGTTAAGGAACTTACAAAAGGAAGCTATAAAATCAAATATCATTCAGAAGGTCTTGATAAGGATCCAATTGAAATCGACTTTACTCCACCTTTCAGAAGGATTGACATGATAGAAGAATTAGAGAAAATAGCAGACCTCAGTATTCCCAAGGACTTGTCCAGTGAGGAAGCGAATCAATATCTGAAAGATGCATGCTTGAAGTATGACATTATATGTCCTCCCCCTGAAACAACAGCTCGACTATTGGATAAACTGGTGGGGCACTTCTTGGAAGAAACGTGTGTGAATCCTACATTCATCATGAACCATCCTGAGATAATAAGCCCTTTGGCAAAATGGCACAGATCAAAACCAGGACTAACTGAACGTTTTGAATTGTGTGTTAATAAGCATGAACTTTGTGATGCATATACTGAATTGAATGACCCAGTAGTTCAACGTCAGCGATTTGCTGAACAACTCAAGGATCGCCAATCAGGTGATGATGAAGCAATGATCATAGACGAAACATTCTGTACGGCTCTGGAGTATGGTTTACCACCAACTGCGGGTTGGGGTATGGGCATAGATAGGCTGACCATGTTGCTGACAGATTCACAGAATATGAAGGAGGTTCTTCTTTTCCCATCCATGAAACCTCAAGATTGA 1791 0.402 MEGSSEPPPPAAGETFSKNALKRELRNKQREEERRLKEEEKARKATEMQSAQPKRHASVKDDEDMEPTQYHENRLKYLAAQKSDRNERYPHKFSVSISIKEYIEKYGGLSDGEHLEKIIVSLAGRIMHKRSSGAKLVFYDLHGVGFKVQVIADARNSDLDETEFSKHHSNVKRGDIIGITGFPGKSKKGELSIFPKTFTVLSHCLHMMPRQKSAAAADTANVKKNRWVPGSIRNPETYILKDQETRYRLRHLDLMLNPEVREIFMTRSRIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFITHHNELNMRLYMRIAPELYLKKLVVGGLDRVYEIGKQLRNEGIDLTHNPEFTTCEFYMAYKDYNDLIEITEEMLSGMVKELTKGSYKIKYHSEGLDKDPIEIDFTPPFRRIDMIEELEKIADLSIPKDLSSEEANQYLKDACLKYDIICPPPETTARLLDKLVGHFLEETCVNPTFIMNHPEIISPLAKWHRSKPGLTERFELCVNKHELCDAYTELNDPVVQRQRFAEQLKDRQSGDDEAMIIDETFCTALEYGLPPTAGWGMGIDRLTMLLTDSQNMKEVLLFPSMKPQD 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1352 596 MobiDBLite consensus disorder prediction 19 69 - -
Sto12g1352 596 MobiDBLite consensus disorder prediction 1 69 - -
Sto12g1352 596 Pfam tRNA synthetases class II (D, K and N) 242 592 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Sto12g1352 596 PIRSF LysRS2 11 596 IPR034762 GO:0004824|GO:0005524|GO:0006430
Sto12g1352 596 SUPERFAMILY Nucleic acid-binding proteins 65 209 IPR012340 -
Sto12g1352 596 Pfam OB-fold nucleic acid binding domain 120 200 IPR004365 GO:0003676
Sto12g1352 596 Coils Coil 18 49 - -
Sto12g1352 596 CDD LysRS_N 119 254 IPR044136 GO:0000166
Sto12g1352 596 PANTHER LYSINE--TRNA LIGASE 15 596 - -
Sto12g1352 596 SUPERFAMILY Class II aaRS and biotin synthetases 242 593 IPR045864 -
Sto12g1352 596 PRINTS Lysyl-tRNA synthetase signature 279 289 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Sto12g1352 596 PRINTS Lysyl-tRNA synthetase signature 295 311 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Sto12g1352 596 PRINTS Lysyl-tRNA synthetase signature 324 337 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Sto12g1352 596 PRINTS Lysyl-tRNA synthetase signature 342 359 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Sto12g1352 596 PRINTS Lysyl-tRNA synthetase signature 477 493 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Sto12g1352 596 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 264 594 IPR006195 -
Sto12g1352 596 Hamap Lysine--tRNA ligase [lysS]. 73 595 IPR002313 GO:0004824|GO:0005524|GO:0006430
Sto12g1352 596 PANTHER LYSYL-TRNA SYNTHETASE 15 596 - -
Sto12g1352 596 TIGRFAM lysS_bact: lysine--tRNA ligase 233 595 IPR002313 GO:0004824|GO:0005524|GO:0006430
Sto12g1352 596 Gene3D - 68 210 IPR012340 -
Sto12g1352 596 CDD LysRS_core 257 594 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Sto12g1352 596 Gene3D Bira Bifunctional Protein; Domain 2 238 596 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1352 Sto-Chr12 8928465 8934063 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1352 K04567 - gmx:100785660 1000.35