Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1044 ATGTCTTCACTATGCAAAGATGGGCGACTTCATAAGGCTCTGGATTTACTCGCTGAAATGGAATCCAGAGATCTCCATGTTGGACCCGATATTTATGGAGAACTCCTTCAGGGATGCGTGTACGAGCGAGCTCTTTTTCTGGGTCTGCAAATTCATGCTCAGATCATCAAAAAAGGTGACGTCTTTGCGAGGAATGAGTACATAGAGACCAAATTGGTGATTTTCTATGCGAAATGCGACGTCTCGGATGTGGCCAATCGTCTATTTCGCAGATTAGAGAAACAGAATGTGTTCTCTTGGGCTGCCATTATTGGGTTGCAATCTCGAACGGGTTTGTACGAAGAAGCGTTGTTGAGTTATTGTGAAATGCTAGAGAATGGGTTTTCTCCGGATAATTTCGTCGTTCCCAATGCGTTAAAAGCTTGTGGTGCTCTTCAGTGGGTTGGTACCGGGAAGGGAATTCACGGTTTCATCTTAAAGAAGAAGGGTTTTGATGGGTGTGTTTTTGTTGCTAGTAGTCTCGTGGATATGTATgggaaatttggggttttagagGATGCAAGAAAGGTGTTTGACGGAATGCCTGAGAAGAACGTTGTTGCTTGGAATTCAATGATTGTGGGTTATGCTCAAAATGGACTGAACGAGGAGGCTATTAAGCTCTTTCACATCATGAGAATGGAAGATATTGAACCAACTCGAGTCACTTTATCGGGGTTATTTTCAGCATGTGCTAATTTGGAAGCACTCCAAGAGGGAAGACAAGGGCATGCTCTGGCAATTATAGGAGGATTAGAGTTAGATAACATTCTTGGTAGCTCCATCATAAACTTATATTCCAAGGTCGGATTGATTGAGGAGGCTGAACTAGTTTTCAGCACAATGATCATGAAAGACGTTGTGACATGGAATTTGCTTATATCCAGTTATGTGCAGAGTGGGCTGGTTGAGAAGGCACTTGACATGTGCCATCTGATGAGGGAAGAAAACTTGAGGTTTGACTGTGTGACCCTCTCATCTTTATTGACCGTTGCTGCAGATACAAGAGATAAAGAACTTGGTTTGAAGGGGCATAGCTATTGCATTAAAAACAACTTTGAATCTGATGTTGTTGTCTCAAGTAACATCATAGATATGTATGCAAAATGTGGGAAAATGGATCATGCAAGAAGAGTTTTCAGCTCTACCACAAAAAGAGATATTGTATTATGGAATACCATGTTGGCTGCTTATGCAGACCTGGGTCTGAGTGGTGAGGCCTTGAGATTGTTCTATCAAATGCAGCTAGAGACTATCCCACCAAATGTGATTTCATGGAATTCTGTGATATTGGGTTTCTTTAGAAATGGTCAGGTCATTGAAGCTCAAAACATGTTTTCAGAAATGTACTCTCTTGGTGTTCAGCCTAACTTGGTCACATGGACTACTATGATATCAGGTCTGGCTCAGAACGGTCATAATCATGAAGCTATTCTGGTTTTCCAGCAAATGCAGGAAGCGGGAATTAGACCCAACAGCATAAGCATAACTTCTGCACTCTCGGCATGCACAAATATGGCATTGTTAAAATATGGAAGAGCCATTCATGGGTATGTTCTGAGGCATTACATTTCTTTGTCTCTTCATAACACAAGCTCTATAATGGACATGTATGCTAAATGTGGAGCTATAAATAATACAAAGAGTGTTTTCAACATGTGTTCAAGAAAGGAATTGCCTGTCTACAATGCAATGATCTCTGCTTATGCATCACATGGTCAAGCTACAGAAGCTCTTTCACTTTTTAGACAATTGGAGAAAGAAGGTATTATACCAGATCAAATAACATTGACTAGTGTCTTGTCAGCATGCAGCCATGCTAGGATGGTGAAAGAGGGTCTAGAGCTTTTCAAATATATGGTCTCTGAACTCCATATGGAGCCAAGTTCAGAACATTATGGCTGTCTAATTAAACTTCTTTCCCATTATGGTCAATTGGATGAAGCTCTTAGGATTATTCTTAGTATGCCAAGCCATCCAGATGCACATATATTAGGATCTCTGCTAGTAGCTTGTGGACAAAACCATGAGATTGAACTTGCTAGTTATATAGCAAAATGGTTATTGAAATTGGACCCTGGTAATTCAGGTAACTATGTGGCTCTCTCAAATGTATATGCAACTGCAGGAAGATGGGATGAAGTATCAAATATAAGGGGCTTGATGAAAGAAAAGGGCCTAAGAAAGATTCCTGGATGTAGCTGGATTGAAGTTGGACAAGAACTTAATGTATTTGTCGCTGGTGATAGATCACACCCCGAAACAGAGGAAATTTATATGGCATTGGATCTATTGGCAGTGGAAATGCATTCTACCAAATATGTACATTATAGTTAA 2376 0.4015 MSSLCKDGRLHKALDLLAEMESRDLHVGPDIYGELLQGCVYERALFLGLQIHAQIIKKGDVFARNEYIETKLVIFYAKCDVSDVANRLFRRLEKQNVFSWAAIIGLQSRTGLYEEALLSYCEMLENGFSPDNFVVPNALKACGALQWVGTGKGIHGFILKKKGFDGCVFVASSLVDMYGKFGVLEDARKVFDGMPEKNVVAWNSMIVGYAQNGLNEEAIKLFHIMRMEDIEPTRVTLSGLFSACANLEALQEGRQGHALAIIGGLELDNILGSSIINLYSKVGLIEEAELVFSTMIMKDVVTWNLLISSYVQSGLVEKALDMCHLMREENLRFDCVTLSSLLTVAADTRDKELGLKGHSYCIKNNFESDVVVSSNIIDMYAKCGKMDHARRVFSSTTKRDIVLWNTMLAAYADLGLSGEALRLFYQMQLETIPPNVISWNSVILGFFRNGQVIEAQNMFSEMYSLGVQPNLVTWTTMISGLAQNGHNHEAILVFQQMQEAGIRPNSISITSALSACTNMALLKYGRAIHGYVLRHYISLSLHNTSSIMDMYAKCGAINNTKSVFNMCSRKELPVYNAMISAYASHGQATEALSLFRQLEKEGIIPDQITLTSVLSACSHARMVKEGLELFKYMVSELHMEPSSEHYGCLIKLLSHYGQLDEALRIILSMPSHPDAHILGSLLVACGQNHEIELASYIAKWLLKLDPGNSGNYVALSNVYATAGRWDEVSNIRGLMKEKGLRKIPGCSWIEVGQELNVFVAGDRSHPETEEIYMALDLLAVEMHSTKYVHYS 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1044 791 TIGRFAM PPR: pentatricopeptide repeat domain 200 233 IPR002885 -
Sto12g1044 791 TIGRFAM PPR: pentatricopeptide repeat domain 574 606 IPR002885 -
Sto12g1044 791 TIGRFAM PPR: pentatricopeptide repeat domain 472 505 IPR002885 -
Sto12g1044 791 TIGRFAM PPR: pentatricopeptide repeat domain 402 436 IPR002885 -
Sto12g1044 791 TIGRFAM PPR: pentatricopeptide repeat domain 437 470 IPR002885 -
Sto12g1044 791 TIGRFAM PPR: pentatricopeptide repeat domain 1 25 IPR002885 -
Sto12g1044 791 TIGRFAM PPR: pentatricopeptide repeat domain 608 642 IPR002885 -
Sto12g1044 791 TIGRFAM PPR: pentatricopeptide repeat domain 301 334 IPR002885 -
Sto12g1044 791 Gene3D Tetratricopeptide repeat domain 430 527 IPR011990 GO:0005515
Sto12g1044 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Sto12g1044 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Sto12g1044 791 Gene3D Tetratricopeptide repeat domain 293 355 IPR011990 GO:0005515
Sto12g1044 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Sto12g1044 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Sto12g1044 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Sto12g1044 791 Pfam E motif 690 750 IPR046848 -
Sto12g1044 791 SUPERFAMILY TPR-like 215 728 IPR011990 GO:0005515
Sto12g1044 791 Pfam E+ motif 758 777 IPR046849 -
Sto12g1044 791 Pfam PPR repeat family 197 246 IPR002885 -
Sto12g1044 791 Pfam PPR repeat family 298 343 IPR002885 -
Sto12g1044 791 Pfam PPR repeat family 434 482 IPR002885 -
Sto12g1044 791 Pfam PPR repeat family 574 618 IPR002885 -
Sto12g1044 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Sto12g1044 791 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 482 771 - -
Sto12g1044 791 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 331 491 - -
Sto12g1044 791 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 297 - -
Sto12g1044 791 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 298 374 - -
Sto12g1044 791 Pfam PPR repeat 1 24 IPR002885 -
Sto12g1044 791 Pfam PPR repeat 645 671 IPR002885 -
Sto12g1044 791 Pfam PPR repeat 374 395 IPR002885 -
Sto12g1044 791 Pfam PPR repeat 99 128 IPR002885 -
Sto12g1044 791 Pfam PPR repeat 402 428 IPR002885 -
Sto12g1044 791 PANTHER OS07G0578800 PROTEIN-RELATED 1 297 IPR045215 GO:0003723|GO:0009451
Sto12g1044 791 PANTHER OS07G0578800 PROTEIN-RELATED 482 771 IPR045215 GO:0003723|GO:0009451
Sto12g1044 791 PANTHER OS07G0578800 PROTEIN-RELATED 298 374 IPR045215 GO:0003723|GO:0009451
Sto12g1044 791 PANTHER OS07G0578800 PROTEIN-RELATED 331 491 IPR045215 GO:0003723|GO:0009451
Sto12g1044 791 Gene3D Tetratricopeptide repeat domain 157 262 IPR011990 GO:0005515
Sto12g1044 791 Gene3D Tetratricopeptide repeat domain 356 429 IPR011990 GO:0005515
Sto12g1044 791 Gene3D Tetratricopeptide repeat domain 1 156 IPR011990 GO:0005515
Sto12g1044 791 Gene3D Tetratricopeptide repeat domain 541 759 IPR011990 GO:0005515
Sto12g1044 791 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1044 Sto-Chr12 6561652 6564027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1044 123 788 Glycoside Hydrolase AT3G49170 30.112 5.42e-103 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1044 - - cam:101507631 1170.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1044 12 6561652 6564027 Sto12g1044 12 6561652 6564027 ECH