Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1006 ATGTCGAAGCTGCTTCTCCACACTTCTCATCTCATCTCCCTTCCCTCTACTGCCCCCCGTTCCCGCTTCCGTTTTCGAAGCCCTTTCTCCGTTTCGGTCTCTTCTATTTCGCGTCCTCACCGTCTCCCTCCATTTCAGTCCACTAGAGACCTATCAGTTCGTGCTTTCGATTCTGAGCCATCCGAGGAACAAGCTGCGGATGAGCTGGCGGGGAAGGATGGGATTGGTGATCAATTTGTCAGAATTGCTGATGAGGATTATCCTACTGGTGAGTTTGAATTTGAACCCATTACCGGCTGGAGAGGATTTCTTGTAAAGCTTAAGATGTTGTTTGCCTTCCCTTGGGAGCGTGTCCGTAAGGGCAGCGTTCTCACTATGAAGTTGCGTGGCCAGATATCCGATCAAATAAAGAGTAGTTTCTCTCGGGGAGTATCTCTGCCTCAAATTTGTGAGAACTTTTTGAAAGCAGCATATGATCCTCGTATTTCTGGCATCTATCTCCATATTGATATTTTGAATTGTGGGTGGGGTAAAGTTGAAGAAATTCGAAGGcacatattgaatttcaaaaaatcAGGAAAATTTGTTGTGGCTTATGTCCCTTCATGTCAAGAAAAAGAGTACTACCTCGCTTGTGCTTGTGACGAGATATATGCCCCTCCAAGtgcttatttttctttgtttggcTTGACGGTTCAAGCCTCATTCCTCAGAGGTGTTTTAGATAACATAGGAATTGAACCACAAGTGGAAAGGATTGGCAAATACAAAAGCGCAGGGGATCAACTAGCCCGTAGAACCATGTCTGAAGAAAATTGTGAGATGCTGACTACACTGCTTGACAATATCTATACAAATTGGCTGGATAAAGTCTCTTCAGTAAAAGGAAAAACAAGAGAAGATATTGAGAACTTTATAAATGAAGGAGTCTATCAAGTGGACAAGCTAAAAGAAGTGGGCTTTATAACAAACATAACCTATGATGATGAGGTTATTTCCATGTTGAAAGAGAGACTTGGAGTGAAAACAGATAAAAATCTTCCTATGGTGGATTACAGAAGATACTCCAGGGTTAGGAAAGGGACTGTTGGAATATCAGGTGGCAAAGACCTGATAGCCATCATCCGAGCCTCAGGGAGTATTAGTCGCATTGAGGGTCCATTAAGTGTGTCAGGCTCAGGTATTATTGGAGAGAAGTTTATTGAGAAGATTCGCAGTGTGAGagAGTCGAAAAAATATAAGGCTGCCATTATCCGAATTGACAGTCCTGGAGGTGATGCTCTTGCGTCTGATTTGATGTGGAGAGAAATCAGACTTTTGGCTGCCTCAAAACCAGTCATTGCTTCAATGGCTGATGTGGCAGCTAGTGGAGGTTACTATATGGCAATGGCAGCAGGAGCTATTGTTGCAGAAAACCTTACTTTAACTGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTGGAGAAACTGTACGAGAAGATTGGATTCAATAAAGAAATCATCTCAAGGGGAAGATATGCTGAGGTCCTTGCTGCAGAACAACGTCCTTTTAGACCAGACGAAGCAGAATTATTTGCCAAGTCTGCACAGAATGCTTATAAACAATTTCGTGATAAGGCAGCATTTTCCAGATCGATGACTGTGGATCAGATGGAAGAGTTTGCTCAGGGGAGAGTTTGGACAGGTAAAGATGCAGCTTCACGTGGTTTGGTTGATGCTATTGGTGGGCTTTCTCGTGCAGTTGCCATAGCAAAATTGAAGGCCAATATACCTCAAGACAGACAGGTTACACTTGTGGAGCTCTCGAGACCCAACCCTTCTCTACCAGAGATTTTAAGTGGCCTTGGGAGTACCCTAGTTGGAGTAGACAGAACATTGAAGGATCTATTGCAAGGCTTGACATTTTCTGAAGGAGTTCAAGCACGGATGGACGGAATCATGTTTGAGAACTTGGAAGGATATCCTTATGCCAACCCCATTTTGACATTGATAAAAGATTACCTTAGTTCCCTGTAG 2019 0.426 MSKLLLHTSHLISLPSTAPRSRFRFRSPFSVSVSSISRPHRLPPFQSTRDLSVRAFDSEPSEEQAADELAGKDGIGDQFVRIADEDYPTGEFEFEPITGWRGFLVKLKMLFAFPWERVRKGSVLTMKLRGQISDQIKSSFSRGVSLPQICENFLKAAYDPRISGIYLHIDILNCGWGKVEEIRRHILNFKKSGKFVVAYVPSCQEKEYYLACACDEIYAPPSAYFSLFGLTVQASFLRGVLDNIGIEPQVERIGKYKSAGDQLARRTMSEENCEMLTTLLDNIYTNWLDKVSSVKGKTREDIENFINEGVYQVDKLKEVGFITNITYDDEVISMLKERLGVKTDKNLPMVDYRRYSRVRKGTVGISGGKDLIAIIRASGSISRIEGPLSVSGSGIIGEKFIEKIRSVRESKKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMADVAASGGYYMAMAAGAIVAENLTLTGSIGVVTGKFNLEKLYEKIGFNKEIISRGRYAEVLAAEQRPFRPDEAELFAKSAQNAYKQFRDKAAFSRSMTVDQMEEFAQGRVWTGKDAASRGLVDAIGGLSRAVAIAKLKANIPQDRQVTLVELSRPNPSLPEILSGLGSTLVGVDRTLKDLLQGLTFSEGVQARMDGIMFENLEGYPYANPILTLIKDYLSSL 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1006 672 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 373 585 IPR004635 GO:0006508|GO:0008233
Sto12g1006 672 Gene3D - 516 641 - -
Sto12g1006 672 Pfam Peptidase family S49 440 590 IPR002142 GO:0006508|GO:0008233
Sto12g1006 672 Pfam Peptidase family S49 189 341 IPR002142 GO:0006508|GO:0008233
Sto12g1006 672 PIRSF Protease_4_SppA 77 672 IPR004634 GO:0006465|GO:0008233|GO:0016021
Sto12g1006 672 PANTHER PROTEASE 4 22 671 - -
Sto12g1006 672 CDD S49_SppA_67K_type 124 337 - -
Sto12g1006 672 Gene3D - 121 357 - -
Sto12g1006 672 SUPERFAMILY ClpP/crotonase 372 577 IPR029045 -
Sto12g1006 672 SUPERFAMILY ClpP/crotonase 112 326 IPR029045 -
Sto12g1006 672 Gene3D - 367 515 - -
Sto12g1006 672 CDD S49_Sppa_N_C 372 586 IPR002142 GO:0006508|GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1006 Sto-Chr12 6256530 6263205 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1006 K04773 - gmx:100781522 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1661 3 12653626 12655574 Sto12g1006 12 6256530 6263205 CCT
Sto12g1006 12 6256530 6263205 Sto12g1006 12 6256530 6263205 ECH