Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0976 ATGGGGAATAGGAGTGGCGGTAGTTGTGTTGGTCTTCATGAAGCCGAAGCGCTTGAGATGGCAGCGCAGGAAGCTAACCCTGCCCCTGCTCCTAGTGCCCAAGTGGTTGGCAATGCCTTTGTGGAGCAATATTACCATATTCTGCaccaatccccaaacttggtgcACAGATTTTATCAGGATTCAAGTTTCTTAAGCCGACCAGACAACAATGGAGTGATGACAACAGTGACAACTATGGAAGCAATAAATGAAAAGATTATTTCCCTGAATTATGAAGACCATACAGCAGAAATAAAAACTGCAGATGCTCAGGACTCATATGATAAAGGTGTGATAGTTTTAGTTACTGGATGCTTAACTGGGAAGGAAGGTGTGACAAGGAAGTTCACACAGACATTCTTTCTAGCTCCACAAGATAAAGGCTATTATGTCTTAAACGATGTCTTTCGGTATATTGAGGAGAACGACACATCAAAATTAAATTCTGTCTCAGAAACTGTCATCAATGAAAACACTGAGAAAGCTCCTGTTCCAGAAGCAGAGGTTATACATGCTGCTGAACAACATGTGGCAGACCCTGAAACTTCTGTAGAGGGAGAAAACCTTCATAATGGTGCCGAAGTTACCGATCCTTTGGACAATGAGGAAGAAGGATCAGTTATAGATGAAGAGGCTGCTGAACCCTCTATTGAACTAAGTCAGAACAATATTGTTACAACTCATGATTCAACTCCAGCAGTCCAGGACGATGCTCCAAAAAAATCATATGCATCTATTgTAATGAAAAGCAATGCAGCATCTGGTCCTGTCTATGTTGCTACCCGAACTGTAAGAGTGGCATCTACAAAAACCAGTCAACAATTACCTGCTCCTGTCAAGTCTACACCTGGACCTGAGGCACTAGTTCCTAGTAGTGATAGTGCTCCTGGGAGTAGTGATGTTCCCGAAGAAGCTGAAGGTCACTCCATATATGTGCGGAATTTGCCATTTAATGCAACAGTTGAACAACTTGAGGAGgtttttaagaaatttggtcctaTTAAGCATGATGGAATTCAAGTTAGAAGTAGCAAGCAGGGATTCTGTTTTGGATTCGTTGAATTCGAAGAATTGAGTTCCATGCAGAGTGCACTTGAGATTTTTTACCTATGTTTGGGAAATAAGGCTTCAAGTGGTGATGATGGTGTTGATTCCATTGCTGTAGAAGTGGTGGTGGTAACAGTAGAACTGAAAGTGATAACTGATGACAGGCATACATATATGGAAGAGAATGAGTCAAAAAATGGGAAATTAAGTCAGCTTAATTACCTATTTTACTTGGCTTCACCAATCACAGTTGGTGGTCGACAAGCTGTCATTGAGGAAAAGAGAACTACTACTCGAGTTAGCGGCAATAGTGGGAGAGGGAGGTATCCTTCAGGAAGAGGTAGCTTCCGAAACGAGAGTTTTCGCGGCCGAGGGAAATTTGGTGGCGGCCGGGGTTATGGCAGAAATGAATTCAGAAACCAGGGGGAGTTTTCACCGCGGCCTAAGGGACCTGCTGGACAGAAAGGAGATAGTTCTTTACAAGTAAGTCAGAATGGAGGCGGGCGAGGTGGTGGCCGGCAAGGTGGGGGGAACCGGAGTTCTCTACCATCAACTTCTGCATGA 1653 0.4259 MGNRSGGSCVGLHEAEALEMAAQEANPAPAPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLSRPDNNGVMTTVTTMEAINEKIISLNYEDHTAEIKTADAQDSYDKGVIVLVTGCLTGKEGVTRKFTQTFFLAPQDKGYYVLNDVFRYIEENDTSKLNSVSETVINENTEKAPVPEAEVIHAAEQHVADPETSVEGENLHNGAEVTDPLDNEEEGSVIDEEAAEPSIELSQNNIVTTHDSTPAVQDDAPKKSYASIVMKSNAASGPVYVATRTVRVASTKTSQQLPAPVKSTPGPEALVPSSDSAPGSSDVPEEAEGHSIYVRNLPFNATVEQLEEVFKKFGPIKHDGIQVRSSKQGFCFGFVEFEELSSMQSALEIFYLCLGNKASSGDDGVDSIAVEVVVVTVELKVITDDRHTYMEENESKNGKLSQLNYLFYLASPITVGGRQAVIEEKRTTTRVSGNSGRGRYPSGRGSFRNESFRGRGKFGGGRGYGRNEFRNQGEFSPRPKGPAGQKGDSSLQVSQNGGGRGGGRQGGGNRSSLPSTSA 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0976 550 MobiDBLite consensus disorder prediction 193 219 - -
Sto12g0976 550 CDD NTF2 32 154 IPR018222 -
Sto12g0976 550 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 20 389 - -
Sto12g0976 550 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 442 538 - -
Sto12g0976 550 MobiDBLite consensus disorder prediction 458 550 - -
Sto12g0976 550 Gene3D - 27 156 - -
Sto12g0976 550 SUPERFAMILY NTF2-like 32 153 IPR032710 -
Sto12g0976 550 Gene3D - 305 389 IPR012677 -
Sto12g0976 550 SMART rrm1_1 323 394 IPR000504 GO:0003723
Sto12g0976 550 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 380 IPR000504 GO:0003723
Sto12g0976 550 MobiDBLite consensus disorder prediction 283 319 - -
Sto12g0976 550 SUPERFAMILY RNA-binding domain, RBD 307 381 IPR035979 GO:0003676
Sto12g0976 550 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 427 IPR000504 GO:0003723
Sto12g0976 550 Pfam Nuclear transport factor 2 (NTF2) domain 36 152 IPR002075 -
Sto12g0976 550 ProSiteProfiles Nuclear transport factor 2 domain profile. 36 152 IPR018222 -
Sto12g0976 550 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 442 538 IPR039539 -
Sto12g0976 550 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 20 389 IPR039539 -
Sto12g0976 550 CDD RRM_SF 324 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0976 Sto-Chr12 6045282 6052783 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0976 K24983 - gmx:100801253 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0976 12 6045282 6052783 Sto12g0976 12 6045282 6052783 ECH