Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0958 ATGGAACATGTTGATGTTTTGGTACTCACTAAAATCCAAATTGGGTGCTTGATCACTTATTACAAACAGGACTCTGATAATGATCACATCTACCACTCAGAACTCATTACTTTGACAAAGAGGATGGCTAGGGGAGAACCATACAAGCTTTCCTTCACTGTGCCAATATTTGAACCTCATCCACCACAATACTACATTCATGCCATATCTGATTCTTGGTTGAATGCAGAGGCTTTCTACACTatatcttttcataatttagcactgCCAGAGGCTCGTACTGCTCATACAGAACTCCTTGATTTAAAACCTCTCCCAGTGACTTCGCTAGGCAACAGTGCTTATGAAgctttatataaattttcacATTTTAATCCCATACAAACACAGACGTTTCATGCCTTGTATCACACAGACAATAATATTCTGTTAGGAGCTCCAACTGGAAGTGGAAAGACTATATCTGCTGAGCTTGCTATGTTTCGTCTCTTCAACACTCAGCCTGATATGAAGGTTTATacccaaaaaggaaaaagagtaaaAGGGAAATGGCCTGAGGGAGCTGCTGGTTTATCTGAGCCTGTCATTAAGCATGTGTTTTCTAGAAAGAAAAGGTCAGTAGGAGGGATAAAAGAGAGCTTCCAGAGTAATATGGTGCTAGCTGGGTGCTGTGGGATCCTCAAGAGTAGTGCCTTTCAAATGCTAGCTGTTGTTTATCTTCATTTGCACTCTGTTTTCTCTATTAATTCGTTCTATAGTACTGGGTTCATGGCTGTCACTGTTGGTAGTGGTACTGCTTTGAGCATTTCTACCTTATCCATCTCTGTTATTTATATAGCACCTTTGAAGGCCATTGTTAGGGAAAGAGTGAATGATTGGCAAAAACGTCTTGTCTCTCAGCTAGGGAAGAAGATGGTTGAAATGACAGGAGACTATACTCCGGATTTGATGGCCCTTTTGTCTGCAAATATTATAATAGCTACTCCTGAAAAGTGGGATGGCATCAGTCGCAATTGGCATAGTCGCAGCTATGTCACTAAGGTTGGACTAATGATATTGGATGAAATTCACTTACTGGGGGCTGATCGGGGGCCCATCCTTGAGGTAATTGTTTCAAGGATGAGATACATATCATCACAAACAGAGCGTGCAGTACGATTTGTGGGTCTTTCCACCGCTCTAGCCAATGCTGGTGACTTAGCCGATTGGTTGGGTGTTGAAGAAATTGGACTCTTCAATTTCAAGCCAAGTGTGAGGCCTGTACCTCTGGAAGGATATCCTGGAAAGTATTACTGCCCAAGGATGAATAGTATGAATAAACCAGCCTATGCCGCAATATGCACACATTCACCAACAAAGCCTGTTCTGATATTCGTTTCATCACGACGGCAGACAAGACTTACTGcattggacttaattcagTTTGCTGCTTCAGATGAACATCCAATACAGTTCCTCAATATTCCAGAAGAAGCACTGCAAATGGTTCTGTCTCAAGTCTCCGATCAAAACCTGAGGCATACTTTACAGTTTGGCATTGGATTACATCATGCAGGCCTGAATGACAAAGACAGATCACTGGTATTGGTTTGTACAAGTACGTTGGCTTGGGGTGTGAATCTTCCTGCTCATCTAGTAATTATCAAGGTGGAAGATGGGAAGGTAGAATTTGGAGAAACCAGTTTATTGGGAACAGAATACTATGATGGAAAAGCAAAGAGGTATGTTGATTTTCCAATAACTGATATCTTGCAAATGATGGGTCGTGCTGGACGTCCTCAATTTGACCAACATGGGAAAGCGGTCATTCTTGTTCATGAACCCAAGAAGAGCTTCTATAAAAAGTTCTTGTATGAGCCATTTCCTGTTGAGAGCAGTCTGAAGGAGCAGTTGCATGATCACATTAATGCAGAAATTGTGTCTCGAACAATCTGCCATAAACAAGATGCAGTGCATTATCTTACATGGACTTACTTGTTCCGTAGGCTGACCGTTAATCCTGCCTACTATGGATTGGAGAATGCAGAACCTGAGATTCTAAGTTCGTTTATGTCTAGCCTAGTGCAGAACACATTTGAAGACCTAGAAGACAGTGGATGCGTCAAAGTGAATGAAGATGAGGTGGAGCCGATGATGCTAGGTTCCATAGCATCTCAGTATTACCTCAGCTACATGACTGTATCAATGTTTGGTTCAAACATAGGTCCAGATACATCACTTGAAgTGTTTTTGCATATTTTGTCTGCTGCTTCTGAATTTGATGAGCTCCCTGTGCGCCATAATGagGAAAAATACAATGAAAAACTATCTGAGAAAGTGAAATATTCAGTGGATAAAACTCGTCTAGATGATCCTCATGTCAAAGCAAATCTTCTATTTCAGGCTCATTTTTCTCAGTTGGAGTTACCAATCAGTGACTATATTACGGACTTGAAATCAGTATTAGATCAGAGTATACGTATAATTCAGGCCATGATTGATATATGTGCGAACAGCGGTTGGCTTTCAAGCTCAATTACTTGCATGCATCTTCTGCAAATGGTCATGCAGCAACTGCTAGATATTCCTAAGGCAGCATTGCAGTCTCTAACTGGAAATTTCCCGGCTTCAAGATTATATCAGGATCTGCATCACTTCCCTCGTGTCAGAATGAAAGTAAAGCTTCAGGGGAAGGACACTGATAGTGGGAGGTCCCGCACTTTGTCCATCAGATTGGAGAAGATTAATTCTAGGCGACATTCTTCTAGAGCTTTTGTACCTAGATTCCCTAAGATAAAAGATGAACAATGGTGGTTGGTTCTTGGTAATACCTCTACCTCTGAGTTGTATGCTTTGAAAAGAATTTCTTTTTCTGATCATACGGTTACCTCCATGGAGTTACCGCCAACTCCATCTACACTTCAGgGTATGAAACTGTTCTTAGTATCAGATTGTTACGTTGATTTTCAGCAAGAATACTCAATCCAAGAACTTATGGGTAGTCAGCAAGAAGCTAGGGTTAAGTAA 3006 0.4019 MEHVDVLVLTKIQIGCLITYYKQDSDNDHIYHSELITLTKRMARGEPYKLSFTVPIFEPHPPQYYIHAISDSWLNAEAFYTISFHNLALPEARTAHTELLDLKPLPVTSLGNSAYEALYKFSHFNPIQTQTFHALYHTDNNILLGAPTGSGKTISAELAMFRLFNTQPDMKVYTQKGKRVKGKWPEGAAGLSEPVIKHVFSRKKRSVGGIKESFQSNMVLAGCCGILKSSAFQMLAVVYLHLHSVFSINSFYSTGFMAVTVGSGTALSISTLSISVIYIAPLKAIVRERVNDWQKRLVSQLGKKMVEMTGDYTPDLMALLSANIIIATPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERAVRFVGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEGYPGKYYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPIQFLNIPEEALQMVLSQVSDQNLRHTLQFGIGLHHAGLNDKDRSLVLVCTSTLAWGVNLPAHLVIIKVEDGKVEFGETSLLGTEYYDGKAKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLKEQLHDHINAEIVSRTICHKQDAVHYLTWTYLFRRLTVNPAYYGLENAEPEILSSFMSSLVQNTFEDLEDSGCVKVNEDEVEPMMLGSIASQYYLSYMTVSMFGSNIGPDTSLEVFLHILSAASEFDELPVRHNEEKYNEKLSEKVKYSVDKTRLDDPHVKANLLFQAHFSQLELPISDYITDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQQLLDIPKAALQSLTGNFPASRLYQDLHHFPRVRMKVKLQGKDTDSGRSRTLSIRLEKINSRRHSSRAFVPRFPKIKDEQWWLVLGNTSTSELYALKRISFSDHTVTSMELPPTPSTLQGMKLFLVSDCYVDFQQEYSIQELMGSQQEARVK 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0958 1001 CDD SF2_C_Ski2 419 606 - -
Sto12g0958 1001 Gene3D - 88 177 IPR027417 -
Sto12g0958 1001 Gene3D - 261 419 IPR027417 -
Sto12g0958 1001 SUPERFAMILY "Winged helix" DNA-binding domain 622 722 IPR036390 -
Sto12g0958 1001 Pfam Sec63 Brl domain 23 83 IPR004179 -
Sto12g0958 1001 Pfam Sec63 Brl domain 710 989 IPR004179 -
Sto12g0958 1001 Pfam DEAD/DEAH box helicase 126 394 IPR011545 GO:0003676|GO:0005524
Sto12g0958 1001 SUPERFAMILY E set domains 895 988 IPR014756 -
Sto12g0958 1001 SUPERFAMILY Sec63 N-terminal domain-like 743 855 - -
Sto12g0958 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 622 IPR027417 -
Sto12g0958 1001 Gene3D - 420 623 IPR027417 -
Sto12g0958 1001 SMART Sec63_2 710 990 IPR004179 -
Sto12g0958 1001 Gene3D - 624 717 IPR036388 -
Sto12g0958 1001 SMART ultradead3 120 424 IPR014001 -
Sto12g0958 1001 Gene3D C2 domain 18 87 IPR035892 -
Sto12g0958 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 412 IPR027417 -
Sto12g0958 1001 PANTHER SEC63 DOMAIN-CONTAINING 274 989 - -
Sto12g0958 1001 PANTHER SEC63 DOMAIN-CONTAINING 29 172 - -
Sto12g0958 1001 Gene3D C2 domain 878 991 IPR035892 -
Sto12g0958 1001 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 412 IPR014001 -
Sto12g0958 1001 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 274 989 - -
Sto12g0958 1001 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 29 172 - -
Sto12g0958 1001 Gene3D - 718 854 - -
Sto12g0958 1001 SMART helicmild6 503 594 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0958 Sto-Chr12 5939182 5949391 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0958 K18663 - gmx:100811503 1240.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0958 12 5939182 5949391 Sto12g0958 12 5939182 5949391 ECH