Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0947 ATGGGGAGAAGAAAAGATTCAATGAATAAGTCTCTAATATCAACACTTCATGCTAGTAAGATACCAGTCGAAAGATATGTGATTGCGGCATTTCCAGATGAAATTCTTGATCTAGACAGATCTGTACGCACTCTTGACTTGACACATAATCGAATAGTTGACATTCCCATGGAAATTagcaaattaattaacttgCAGCGCCTGGTATTAGCTGAAAACCTCATTGACAGACTGCCAGTGAATGTCGGGAAGCTTCAATCTCTAAAAGCCATGATCCTTGATGGAAATCGAATTACTTCCTTGCCTGATGAATTGGGCCAATTGGTGAGGCTTGAGCGCTTATCCATATCAGGGAATTTGTTAACAGGCTTGCCTTCTACCATTGGCAGCTTGCGAAATCTGTTGCTTTTGAATGTGTCAAACAACAACTTGAAATATCTTCCAGAATCTGTTGGGAGTTGCTTCTCTTTGGAAGAATTACAAGCCAATAATAATAATATTGAAGACCTTCCTTCTTCTGTGTGCAATCTTACTTACCTGAAGTCACTTGTCTTGGATAACAATAATGTGAAGGAGATACCTCCCAATCTGTTGAAAGACTGCAAAGCTCTTCAAAACATATCTCTGCATGGTAATCCTATATCAATGGATCAATTTCAACAGGTAAACATGGTGCAGAAGCGTCCTCTTGATGCTGAGCAAATATTTGAGGTGTCTTTTAAACACCCAAAACATGTGGGACCCAGCAATCAGTTTGTCTCATTCCCAAAATCTGTTTTTCTTGAGGATGCTTGTCAGTTACCCAAAAATTCAGAGGGTGGACGCAGACAAGTTACTATTGAAGGTAATGAGAATCCTGACGTTGATAATTTTGAACTTCCTGGAGGTGCTGGAGACTCCAAAACAAGCATTCCTGGAAATATTTATGTTTCTTCTTGGGCCACCAGTAATACTATTGAAGATGTACAATCAGAGTCACCTGGACATGTCCCTATTATCCCTGAGTATTTCAGTCCAGATCGTCCATTAAGGACATTAGTACGCTATGAGGACATCTATTCCATACTTCTTGAACACCCTCCTCGTAAACTTGTATCTGTTGGAGCCAATTATCAAGCTGATATTCCATCATTGGAtttttcagctgcctctagTAGACCAGAAGCCTCTGATGCTCACTCAGATTCCAACTCAATGGTCAGGGATGAAGAAGTACAGAAAAGACTGATGGGGAGCTGTATAATCCCGATGCCTCAAATGGAATCTACCTATGATAATGAAAAAGTTGGAAAGGGCCGAACTGATTGTAGCTGTGATGATATGGGATCTGTGAGATGTGTTAGACAGCATATTGTGGAAGCAAGAGAGGAACTTATCAAAAGCCTTGGGCATGAGAGGTTTACTGAATTGGGGTTCTCTGACATGGGAGAGCAAGTAGCAGAAAAATGGAGTGCAAGAGAAGAACATATCTTTCATGAGTTTGTCTTCAATAATCCATCATCCTTGGACAAGAATTTCTGGAACAATCTTTCTGTTGTTCTTCCCTCTCGAACCAAAAGGGAGATAATTAGTTACTATTTTAATGTCTTCATGATTCAGAGGCGGGCTGAGCAGAACCGAAACGAGCTATGGAACATAGACAGTGATAATGATGAATGGCAAGGTGGTGATGACAATGAAGTTGCAACTCTAGGGGAAGACCAAGATTCTATTGCTGATTCCCCTGTCTGTCACAGAAATTATTTGGTCAATTATGATGACTATCCTGCTGAAGAACCTTCTGATGTTAGTGGAATTTTGGATTTTACCAATAGGGACATTGGTGTTGATTCAAAATATGATCAATCAGAAATACCTCAGTCAAGTGGTTCCCTCGCTCCTATTCAACCCCAGGAGAGTTGTGATGAAGTGAAGATGGAGAATGGTGATCACTGGTTTGGTGACCCAAATGGAGTGAGCAATGGTTGTAGCCAAAGATATATCACTTTAGGAGAGGCTTTAGGAGATGGACGAAGGCAAGAAACAAGATGA 2031 0.3998 MGRRKDSMNKSLISTLHASKIPVERYVIAAFPDEILDLDRSVRTLDLTHNRIVDIPMEISKLINLQRLVLAENLIDRLPVNVGKLQSLKAMILDGNRITSLPDELGQLVRLERLSISGNLLTGLPSTIGSLRNLLLLNVSNNNLKYLPESVGSCFSLEELQANNNNIEDLPSSVCNLTYLKSLVLDNNNVKEIPPNLLKDCKALQNISLHGNPISMDQFQQVNMVQKRPLDAEQIFEVSFKHPKHVGPSNQFVSFPKSVFLEDACQLPKNSEGGRRQVTIEGNENPDVDNFELPGGAGDSKTSIPGNIYVSSWATSNTIEDVQSESPGHVPIIPEYFSPDRPLRTLVRYEDIYSILLEHPPRKLVSVGANYQADIPSLDFSAASSRPEASDAHSDSNSMVRDEEVQKRLMGSCIIPMPQMESTYDNEKVGKGRTDCSCDDMGSVRCVRQHIVEAREELIKSLGHERFTELGFSDMGEQVAEKWSAREEHIFHEFVFNNPSSLDKNFWNNLSVVLPSRTKREIISYYFNVFMIQRRAEQNRNELWNIDSDNDEWQGGDDNEVATLGEDQDSIADSPVCHRNYLVNYDDYPAEEPSDVSGILDFTNRDIGVDSKYDQSEIPQSSGSLAPIQPQESCDEVKMENGDHWFGDPNGVSNGCSQRYITLGEALGDGRRQETR 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0947 676 Pfam Leucine rich repeat 40 98 IPR001611 GO:0005515
Sto12g0947 676 Pfam Leucine rich repeat 156 214 IPR001611 GO:0005515
Sto12g0947 676 Gene3D Ribonuclease Inhibitor 17 240 IPR032675 -
Sto12g0947 676 SMART LRR_bac_2 131 150 - -
Sto12g0947 676 SMART LRR_bac_2 85 104 - -
Sto12g0947 676 SMART LRR_bac_2 108 127 - -
Sto12g0947 676 SMART LRR_bac_2 156 173 - -
Sto12g0947 676 CDD SANT 482 530 IPR001005 -
Sto12g0947 676 ProSiteProfiles Leucine-rich repeat profile. 41 62 IPR001611 GO:0005515
Sto12g0947 676 PANTHER DNA BINDING PROTEIN 224 633 - -
Sto12g0947 676 ProSiteProfiles Leucine-rich repeat profile. 156 177 IPR001611 GO:0005515
Sto12g0947 676 SUPERFAMILY L domain-like 38 216 - -
Sto12g0947 676 SMART LRR_typ_2 108 130 IPR003591 -
Sto12g0947 676 SMART LRR_typ_2 177 200 IPR003591 -
Sto12g0947 676 SMART LRR_typ_2 62 84 IPR003591 -
Sto12g0947 676 SMART LRR_typ_2 131 154 IPR003591 -
Sto12g0947 676 SMART LRR_typ_2 85 107 IPR003591 -
Sto12g0947 676 MobiDBLite consensus disorder prediction 382 402 - -
Sto12g0947 676 PANTHER DNA BINDING PROTEIN 224 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0947 Sto-Chr12 5878606 5889450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0947 42 259 Receptor kinase-like Gene Family AT5G46330 27.419 3.95e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0947 - - aprc:113873168 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0947 12 5878606 5889450 Sto12g0947 12 5878606 5889450 ECH