Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0922 ATGAGTCAGGTATTCGAAGGATACGAGCGTCAATACTGTGAGCTATCGGCTAATCTTTCCCGGAAATGCACGGCAGCGTCTGCCCTTGATGGAGCAGAGCAGAAGAAGCAGAAACTTTCTGAAATAAAAGCTGGACTCGATGATGCAGACACATTGATTCGAAAAATGGACCTTGAGGCTAGGAGTTTGCAGCCAAATATAAAGGCTACGCTTCTTGCCAAGCTAAGGGAATATAAAACTGATTCGAACAATTTGAAAAATGAAGTTAAAAGAATCTCATCAGCTAATGCCAACCCGGCTGCTCGAGATGAGTTGCTGGAATCAGGAAGTGCTGATGCACTGATGGTCTCAAATGATCAAAGAGGAAGACTGTTGATGTCAACTGAGAGATTAAATCAGTCCACTGATAGAATAAAGGAGAGTAGAAAAGCTATGCTAGAGACTGAGGAACTTGGTGTCTCTATCCTCCAAGACCTGCATCAACAACGCCAATCTCTACTCCATGCCCATAATACGCTCCATGGAGTGGATGACAACATTAGCAAAACCAAGAAGATATTGTCATCGATGTCCAAAAGAATGAACAGAAATAAATGGATTCTTGGCTCCTTAATCACAACGCTGGTCCTTGCAGTTATATTAATCCTATATTTCAAGCTGACTCGTTAG 669 0.423 MSQVFEGYERQYCELSANLSRKCTAASALDGAEQKKQKLSEIKAGLDDADTLIRKMDLEARSLQPNIKATLLAKLREYKTDSNNLKNEVKRISSANANPAARDELLESGSADALMVSNDQRGRLLMSTERLNQSTDRIKESRKAMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKTKKILSSMSKRMNRNKWILGSLITTLVLAVILILYFKLTR 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0922 222 PANTHER VESICLE TRANSPORT V-SNARE 13-LIKE 1 221 - -
Sto12g0922 222 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 221 - -
Sto12g0922 222 CDD SNARE_Vti1 128 189 - -
Sto12g0922 222 Coils Coil 29 49 - -
Sto12g0922 222 Gene3D - 1 100 IPR038407 -
Sto12g0922 222 Coils Coil 68 95 - -
Sto12g0922 222 PIRSF Membrin-2 1 219 IPR027027 GO:0005484|GO:0005794|GO:0016192
Sto12g0922 222 Pfam Vesicle transport v-SNARE protein N-terminus 12 91 IPR007705 GO:0006886|GO:0016020
Sto12g0922 222 SUPERFAMILY SNARE fusion complex 131 190 - -
Sto12g0922 222 Pfam Snare region anchored in the vesicle membrane C-terminus 129 194 - -
Sto12g0922 222 SUPERFAMILY t-snare proteins 6 93 IPR010989 GO:0016020|GO:0016192
Sto12g0922 222 Gene3D - 118 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0922 Sto-Chr12 5712423 5714478 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0922 K08493 - cit:102625899 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0922 12 5712423 5714478 Sto12g0922 12 5712423 5714478 ECH