Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0919 ATGGTATTCTTAAAACGGTTGTCACTTGTTCATGGGAGTGTGAAGAAGCTATTGTTCATTCCCATATGTGACTTCCACACTGACCTCGAACCTCCAAAATCAAACCAAGCCCTTAAGAAGTACCTTGATCGCAACCGCCGCACCCAGGTTCTCCTACTGTTTAGGCACTTGTTAAGAGAAAGGCCCACTTCAATTGATAGCTTCTCCTTCTTGTTTGTCCTCAAATCCTGCACTCGCAAGAAGCGTACTACCATTGGAAAGCAGCTTCATGGCCTCATCTTCAAGTTTGGGTTCGAAACCGTAGTTCAACTCCAAACATCTCTTCTGAAAATGTATTCTGAATGGGGCAAGTTAGGTGATGCACATCAAGTGTTCGATGAAATGCGTGACAGAGGTATTATATGTTGGACGTCTTTGATTTCTGCTTATGTTGAAAATGGGAAACCCAGCAAAGCATTGCAGCTGTTCAGGCAGATGCAGATGAGCAACGTGGAGCCTGATCAAGTCACAGTCACAGTTGCTCTCTCTGCCTGTGCTGATATTGGGGCACTGCAAATGGGTGAATGGATACACTCCTTTGTTAAAAGGAAAGAGGGGCTAAACAGAGATTTGTGCCTTAATAATGCTCTCATAGACATGTATGCTAAATGTGGGGACATCATGGCTGCAAGGAGGTTGTTTGATGGCACTAGAGACAAGAATGTCACTACTTGGACGTCCATGATTGTGGGGCATGCCCTGCATGGGCAAGCAGAAGAAGCTCTCAAGCTCTTCTCACAAATGACTACTAAAACAGAGAATCCCAGCAGTTGTCTCGTGGTACCGAATGATGTAACGTTCATAGGAGTTTTAATGGCTTGTAGCCATGCAGGATTGGTTGAGGAAGGGAAGCACAATTTTAAAAGTATGACTGAGTGTTATAAAATACAACCCAGAGAGCATCACTTTGGTTGTATGGTGGATCTTTTCTGCAGAGCTGGCCTTCTTGAAGATGCCTATAACTTCATTGTGGAGATGCCGGTGCCACCCAATGTGGTAATGTGGCGAACCTTATTAGGGGCATGTAGCCTTCATGGCAACATAGAGTTAGGTGCAAAAGTCAGACATAAGCTACTTGAATTGGATCCTGGCTATGTGGGTGACTATGTTGCTATGTCTAATATTTATGCTAACAAAGGCATGTGGAATAAGAAAATGATTGTCAGAAATCAGATAAAAAAGTCAAGATCCCATGCTAGCATCCTGATTGAGGTAGGAAATGGGGTTAGTGAATTTATGGCAGCGGATGATAATCATgctttCCATCCAGAAACCTCAATTTGTCCTGAACTGAGGCACAATATGGTTACATACTACAAGGAAAAACTGGCACTCTCTCACTCAGATGGGATTTGGATAACTGGTTTTCTTCAGAACTTAAATGATACAAACTATGCCTCAGCAGCAGCCTTACTGGAGATTGATTTCTTATGGTTGATTCCAGACAGAAGAGCTAGCACCAGCAGCAACAGCAAGTCAGACAACATAAAGATGTCCAATATGCCTGCTTATTCATTAACATTCTCTGCCAAGTGCCAAGTTCAAGTAAAAAAACTTGTGAGAATAAGATTTCAGGAAAATACTTAA 1626 0.4256 MVFLKRLSLVHGSVKKLLFIPICDFHTDLEPPKSNQALKKYLDRNRRTQVLLLFRHLLRERPTSIDSFSFLFVLKSCTRKKRTTIGKQLHGLIFKFGFETVVQLQTSLLKMYSEWGKLGDAHQVFDEMRDRGIICWTSLISAYVENGKPSKALQLFRQMQMSNVEPDQVTVTVALSACADIGALQMGEWIHSFVKRKEGLNRDLCLNNALIDMYAKCGDIMAARRLFDGTRDKNVTTWTSMIVGHALHGQAEEALKLFSQMTTKTENPSSCLVVPNDVTFIGVLMACSHAGLVEEGKHNFKSMTECYKIQPREHHFGCMVDLFCRAGLLEDAYNFIVEMPVPPNVVMWRTLLGACSLHGNIELGAKVRHKLLELDPGYVGDYVAMSNIYANKGMWNKKMIVRNQIKKSRSHASILIEVGNGVSEFMAADDNHAFHPETSICPELRHNMVTYYKEKLALSHSDGIWITGFLQNLNDTNYASAAALLEIDFLWLIPDRRASTSSNSKSDNIKMSNMPAYSLTFSAKCQVQVKKLVRIRFQENT 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0919 541 Gene3D Tetratricopeptide repeat domain 272 423 IPR011990 GO:0005515
Sto12g0919 541 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 35 429 - -
Sto12g0919 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
Sto12g0919 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Sto12g0919 541 Pfam PPR repeat 316 339 IPR002885 -
Sto12g0919 541 Pfam PPR repeat 106 133 IPR002885 -
Sto12g0919 541 Pfam PPR repeat 237 262 IPR002885 -
Sto12g0919 541 Pfam PPR repeat 208 229 IPR002885 -
Sto12g0919 541 TIGRFAM PPR: pentatricopeptide repeat domain 106 133 IPR002885 -
Sto12g0919 541 TIGRFAM PPR: pentatricopeptide repeat domain 237 263 IPR002885 -
Sto12g0919 541 TIGRFAM PPR: pentatricopeptide repeat domain 134 167 IPR002885 -
Sto12g0919 541 Pfam PPR repeat family 134 179 IPR002885 -
Sto12g0919 541 SUPERFAMILY TPR-like 103 264 IPR011990 GO:0005515
Sto12g0919 541 Gene3D Tetratricopeptide repeat domain 199 271 IPR011990 GO:0005515
Sto12g0919 541 Gene3D Tetratricopeptide repeat domain 33 198 IPR011990 GO:0005515
Sto12g0919 541 Pfam E motif 358 408 IPR046848 -
Sto12g0919 541 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 35 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0919 Sto-Chr12 5694666 5696976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0919 45 432 Glycoside Hydrolase AT3G49170 36.224 4.60e-81 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0919 - - lang:109327537 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0919 12 5694666 5696976 Sto12g0919 12 5694666 5696976 ECH