LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto12g0918	ATGGCTACAACTTCATTGTGTTCATCCACGGTCCAATCTCAAATTCATGGATTGGGCGGGGGACTCAAGCCTCAGAAAACCTCTATTTTTCAACCCCGTTCCTTCACTTTCTCCAGGAGGAAACTCACAACTGTGGTGAAGGCATCTCGTgttgacaagttttcaaaaagcGATATCATTGTCTCTCCATCTATTCTTTCTGCTAACTTTGCAAAATTGGGAGAGCAGGTAAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCACGTTGATGTAATGGATGGCCGTTTTGTTCCAAACATTACAATTGGACCTCTTGTAGTTGATGCCTTGCGCCCTGTCACAGATCTTCCTTTGGATGTGCACTTGATGATTGTAGAACCTGAACAGCGAGTTCCAGATTTTATCAAGGCAGGAGCTGATATAGTCAGTGTTCATTGCGAACAATCTTCCACTATCCATTTGCATCGTACACTTAATCAAATAAAAAGCTTGGGAGCTAAAGCTGGTGTTGTCCTAAACCCTGCTACCCCACTAAGTACCATCGAATATGTTCTTGATGTGGTTGATCTGGTCTTAATCATGTCCGTAAACCCTGGTTTTGGTGGTCAGAGTTTTATTGAGAGCCAAGTAAAGAAAATTTCTGATTTGAGAAGATTGTGTGTTGAAAAGGGAGTGAATCCATGGATTGAAGTGGATGGTGGTGTTGGTCCTGCAAATGCTTACAAGGTGATTGATGCTGGAGCTAATGCTCTTGTTGCTGGTTCTGCTGTGTTTGGAGCTAAGGATTATGCTGAAGCTATAAAAGGAATCAAAAACAGCAAAAAGCCTGAAGCAGTTGCCGTGTGA	849	0.4193	MATTSLCSSTVQSQIHGLGGGLKPQKTSIFQPRSFTFSRRKLTTVVKASRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPATPLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCVEKGVNPWIEVDGGVGPANAYKVIDAGANALVAGSAVFGAKDYAEAIKGIKNSKKPEAVAV	282

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto12g0918	282	Pfam	Ribulose-phosphate 3 epimerase family	61	259	IPR000056	GO:0005975\|GO:0016857
	Sto12g0918	282	TIGRFAM	rpe: ribulose-phosphate 3-epimerase	61	272	IPR026019	GO:0004750\|GO:0006098
	Sto12g0918	282	CDD	RPE	60	272	IPR000056	GO:0005975\|GO:0016857
	Sto12g0918	282	ProSitePatterns	Ribulose-phosphate 3-epimerase family signature 1.	88	102	IPR000056	GO:0005975\|GO:0016857
	Sto12g0918	282	MobiDBLite	consensus disorder prediction	1	20	-	-
	Sto12g0918	282	PANTHER	-	16	272	-	-
	Sto12g0918	282	MobiDBLite	consensus disorder prediction	1	16	-	-
	Sto12g0918	282	PANTHER	RIBULOSE-5-PHOSPHATE-3-EPIMERASE	16	272	IPR000056	GO:0005975\|GO:0016857
	Sto12g0918	282	SUPERFAMILY	Ribulose-phoshate binding barrel	53	274	IPR011060	-
	Sto12g0918	282	Gene3D	Aldolase class I	49	278	IPR013785	-
	Sto12g0918	282	ProSitePatterns	Ribulose-phosphate 3-epimerase family signature 2.	192	214	IPR000056	GO:0005975\|GO:0016857
	Sto12g0918	282	Hamap	Ribulose-phosphate 3-epimerase [rpe].	58	274	IPR026019	GO:0004750\|GO:0006098

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto12g0918	Sto-Chr12	5690773	5694342	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto12g0918	K01783		-	cpap:110810107	501.13

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto12g0918	12	5690773	5694342	Sto12g0918	12	5690773	5694342	ECH