Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0913 ATGAAAGAGTTCCCAACTGTTCAAAGATTAATGAGCCTTTTCGATCGCTGCTCCACCATGAACCATTTGAAGCAAATTCACGCTCGTATAATCCTCACTGGCTATGCTCAACACCCCTTTGTCGTTGGAAAGATCCTTCTTTTCTGTTCAGTTTCAGTGCGCGGCGACATGAACTACGCCCTCTCCGTCTTCGATAGCCTCCAAAAGCCCGATGCTTTTCTCTGGAACACCATGATCAGGGGATTTTCAAACACTACCCAATTCCATAATTCCATTCATTTCTACCGGAGAATGCAGGAGAAAGGAGCAAAAGCAGACAATTTCACCCTCGCTTTCTTGCTTAAAGTTATTGGAGGGCTGGGTTCACTTTCTCTTGGGAAGCAATTTCACTGTAAAACCATTAAGCTTGGCCTTGAAAATCATGCTTATGTGGGGAATTCTCTCATGCACATGTATGGTATGTTAAAGGACATTGACactgcacaccaactgtttgagaGAATGCCCAATGTAGATTTAGTGGCTTGGAACTCTATCATAGACTCTCATGTCAATTGCAAAAACTACAAGGAAGCACTCCAATTGTTCACCAGAATGGTTCAGAGTGGCATACAACCTGATGATGCCACTTTGGTAGTGACCCTCTCAGCTTGTGCTGCCATTGGAGCACTGGAAATTGGGAGGTATATTCATTCCTGTATTAGAAACACTGATCTTGCTGATATTACATCGGTCTGTAATTcccttgttggtatgtatgccAAGTGTGGAGCAGTGGATGAAGCATATGACACATTCAACAAGACCAAAGTGAAGTGCGTGGTGTCATGGAATGTCATGATTCAAGGGCTTGCATCACATGGTGACGGAAAAGAGGCATTGGCATTTTTTTCAAGAATGTTGGAAGAGAATGGTGTGAGACCTGATGAAGTTACATTTTTGGGAGTCCTGTATGCCTGTAGCCATGGAGGGATGGTTGATGAAGGAAGACGATATTTTGATATTATGAGCAGAGACTTCAATATCCAACCCACAATGAAACACTATGGGTGCATGGTGGACCTTTTGGCTCGAGCTGGGTTAGTTGAGGAAGCATACAACTTGATAGAGAGTATGCCAATGGAGTGCAATGCAATTGTGTGGAGGACATTGTTAGCTGCATGCCGAGTCCATGGATATGTTGAACTTGGAGAGACagtgagaaaaaaattattgaaattggAACCAGATCATAGCAGTGATTATGTTCTTCTTGCAAGCATGTATGCAAGTGCAGGTCAATGGAATGAGATGAGCAGAGAAAGAAGATCAATGCATGAAAGGGGAGTTCAGAAACCAAAGCCTGGAAATAGCTTCATTGGCATTTCTGAAGGGAGTGCAGAGAGCAAGCCTATTGAAAGATTGCTATAG 1410 0.4128 MKEFPTVQRLMSLFDRCSTMNHLKQIHARIILTGYAQHPFVVGKILLFCSVSVRGDMNYALSVFDSLQKPDAFLWNTMIRGFSNTTQFHNSIHFYRRMQEKGAKADNFTLAFLLKVIGGLGSLSLGKQFHCKTIKLGLENHAYVGNSLMHMYGMLKDIDTAHQLFERMPNVDLVAWNSIIDSHVNCKNYKEALQLFTRMVQSGIQPDDATLVVTLSACAAIGALEIGRYIHSCIRNTDLADITSVCNSLVGMYAKCGAVDEAYDTFNKTKVKCVVSWNVMIQGLASHGDGKEALAFFSRMLEENGVRPDEVTFLGVLYACSHGGMVDEGRRYFDIMSRDFNIQPTMKHYGCMVDLLARAGLVEEAYNLIESMPMECNAIVWRTLLAACRVHGYVELGETVRKKLLKLEPDHSSDYVLLASMYASAGQWNEMSRERRSMHERGVQKPKPGNSFIGISEGSAESKPIERLL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0913 469 Pfam PPR repeat 74 102 IPR002885 -
Sto12g0913 469 Pfam PPR repeat 146 169 IPR002885 -
Sto12g0913 469 Pfam PPR repeat 349 373 IPR002885 -
Sto12g0913 469 Pfam PPR repeat 245 270 IPR002885 -
Sto12g0913 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Sto12g0913 469 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 6 457 - -
Sto12g0913 469 Pfam E motif 392 453 IPR046848 -
Sto12g0913 469 TIGRFAM PPR: pentatricopeptide repeat domain 74 106 IPR002885 -
Sto12g0913 469 TIGRFAM PPR: pentatricopeptide repeat domain 275 310 IPR002885 -
Sto12g0913 469 TIGRFAM PPR: pentatricopeptide repeat domain 174 207 IPR002885 -
Sto12g0913 469 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 457 - -
Sto12g0913 469 SUPERFAMILY TPR-like 152 430 IPR011990 GO:0005515
Sto12g0913 469 MobiDBLite consensus disorder prediction 433 469 - -
Sto12g0913 469 Gene3D Tetratricopeptide repeat domain 242 303 IPR011990 GO:0005515
Sto12g0913 469 Gene3D Tetratricopeptide repeat domain 304 462 IPR011990 GO:0005515
Sto12g0913 469 Gene3D Tetratricopeptide repeat domain 4 131 IPR011990 GO:0005515
Sto12g0913 469 Pfam PPR repeat family 272 320 IPR002885 -
Sto12g0913 469 Pfam PPR repeat family 172 219 IPR002885 -
Sto12g0913 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 308 IPR002885 -
Sto12g0913 469 Gene3D Tetratricopeptide repeat domain 132 228 IPR011990 GO:0005515
Sto12g0913 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 105 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0913 Sto-Chr12 5666231 5667640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0913 10 457 Glycoside Hydrolase AT3G49170 34.437 2.94e-91 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0913 - - gmx:102668656 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0913 12 5666231 5667640 Sto12g0913 12 5666231 5667640 ECH