Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0887 ATGGCGTCGAGTATAGGTATGATGGACAGTGCCTACTTTGTCGGCAGGAATGAGATTTTGACTTGGATCAACAACAGACTTCAGCTCAATCTCACGCGCATTGAGGAGGCTGCATCTGGGGCTGTACAATGCCAGATGATGGACATGACATATCCTGGGGCTGTTCCAATGCACAAGGTGAATTTTGATGCTAAGTCAGAGTATGATATGATCCAGAATTACAAAGTTCTTCAGGATGTATTCAACAAGCTGAAGATTGAGAAGCATATTGAAGTTAACAGGCTTGTTAAAGGCCGACCTTTGGACAACCTGGAATTTCTACAATGGTTGAAACGTTACTGTGATTCTGTCAATGGAGGCATTATGAATGAGAACTATAATCCTGTTGAGAGAAGGTGTAAGGGTGGAAAGGATAGAGGCATTAAGAGTTCTTTAAAGAGCTCAAAATCACTGCAAACAAATGTCAATAACAGTCATGGTTCAGGCGAATCACTCATTTCTAATAGAACCTCTGGTCCCAAGCAATTTAGATCAACTGGAACAGCAGGTGGAGCTAATTCTTCAACAGAGGTTCAAGCTCTGTCCAAGGAGATAACTGATCTCAAACTCTCTGTGGATGTCCTGGAAAAAGAGAGGGATTTTTACTTTGCAAAACTAAGGGATATAGAAATTCTCTGTCAGACTCCAGAACTGGAAAGTTTACCTATGTCAGTAGCAATTAAGAAGATTTTGTATGCTGCTGATGCAAAGGAATCAGCGTTAGATGAAGCTCAGGATTATCTTAATCAAACTttggaagatgatgaagatgaagccgAAGCCGAAGCCGAAGCTGAAGCTGAAGCAGAAACTGAAGCCTGA 861 0.403 MASSIGMMDSAYFVGRNEILTWINNRLQLNLTRIEEAASGAVQCQMMDMTYPGAVPMHKVNFDAKSEYDMIQNYKVLQDVFNKLKIEKHIEVNRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKDRGIKSSLKSSKSLQTNVNNSHGSGESLISNRTSGPKQFRSTGTAGGANSSTEVQALSKEITDLKLSVDVLEKERDFYFAKLRDIEILCQTPELESLPMSVAIKKILYAADAKESALDEAQDYLNQTLEDDEDEAEAEAEAEAEAETEA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0887 286 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
Sto12g0887 286 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 183 253 IPR004953 GO:0008017
Sto12g0887 286 Gene3D - 183 271 - -
Sto12g0887 286 Coils Coil 191 211 - -
Sto12g0887 286 Gene3D - 6 134 IPR036872 -
Sto12g0887 286 Pfam Calponin homology (CH) domain 16 114 IPR001715 GO:0005515
Sto12g0887 286 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1B 1 274 - -
Sto12g0887 286 MobiDBLite consensus disorder prediction 147 188 - -
Sto12g0887 286 MobiDBLite consensus disorder prediction 266 286 - -
Sto12g0887 286 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1 274 IPR027328 GO:0008017
Sto12g0887 286 Coils Coil 262 285 - -
Sto12g0887 286 Pfam EB1-like C-terminal motif 208 246 IPR004953 GO:0008017
Sto12g0887 286 SUPERFAMILY Calponin-homology domain, CH-domain 5 132 IPR036872 -
Sto12g0887 286 SUPERFAMILY EB1 dimerisation domain-like 190 249 IPR036133 GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0887 Sto-Chr12 5539605 5543083 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0887 K10436 - gmx:100808026 439.884