Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0818 ATGGCCGCAACAACCAATTCAAGGTTTATCAAATGCGTCACAGTTGGAGACGGAGCTGTAGGCAAGACCTGTATGCTTATTTGCTATACTAGCAATAAATTTCCCACGGACTATATCCCCACGGTGTTTGATAATTTCAGTGCAAATGTGGTCGTTGAGGGCACAACTGTTAATCTAGGTCTATGGGACACTGCAGGTCAAGAGGATTACAACAGACTAAGGCCTTTGAGTTACAGAGGGGCAGATGTTTTTGTGTTGGCTTTCTCTTTAGTTAGTCGTGCAAGCTATGAAAATGTATTCAAGAAGTGGATCCCTGAACTCCAGCATTTTGCCCCTGGCGTCCCTGTTGTATTGGTGGGTACCAAATTGGATCTCCGAGAAGACAAGCATTATTTACTTGATCATCCTGGTCTGGTGCCTGTGACTACTGAGCAGAATGTCAAGTCTGTTTTTGATGCTGCAATCAAGATGGTCATCAAACCTCCACAGAAACAGaacgagaagaagaaaaaaccaCGTCAAGGATGTCTACATAGCAACTCTAACTTGCAATGCATAGTAACTATTGATTGTGAGATTCTTATACGTCCATTAgctTTTCTAGATAGGCTTATATGCCATGAGGTGAAATAG 633 0.4107 MAATTNSRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVFKKWIPELQHFAPGVPVVLVGTKLDLREDKHYLLDHPGLVPVTTEQNVKSVFDAAIKMVIKPPQKQNEKKKKPRQGCLHSNSNLQCIVTIDCEILIRPLAFLDRLICHEVK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0818 210 ProSiteProfiles small GTPase Rab1 family profile. 5 210 - -
Sto12g0818 210 PANTHER RHO FAMILY GTPASE 3 145 IPR003578 GO:0005525|GO:0007264
Sto12g0818 210 PANTHER RHO FAMILY GTPASE 143 182 IPR003578 GO:0005525|GO:0007264
Sto12g0818 210 SMART rab_sub_5 10 161 - -
Sto12g0818 210 CDD Rop_like 9 170 - -
Sto12g0818 210 PANTHER GTPASE, PUTATIVE-RELATED 3 145 - -
Sto12g0818 210 PANTHER GTPASE, PUTATIVE-RELATED 143 182 - -
Sto12g0818 210 ProSiteProfiles small GTPase Rho family profile. 3 191 - -
Sto12g0818 210 TIGRFAM small_GTP: small GTP-binding protein domain 10 131 IPR005225 GO:0005525
Sto12g0818 210 Gene3D - 2 179 IPR027417 -
Sto12g0818 210 ProSiteProfiles small GTPase Ras family profile. 5 194 IPR001806 GO:0003924|GO:0005525
Sto12g0818 210 SMART ras_sub_4 7 161 - -
Sto12g0818 210 SMART rho_sub_3 12 161 IPR001806 GO:0003924|GO:0005525
Sto12g0818 210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 158 IPR027417 -
Sto12g0818 210 Pfam Ras family 11 129 IPR001806 GO:0003924|GO:0005525
Sto12g0818 210 PRINTS Transforming protein P21 ras signature 10 31 - -
Sto12g0818 210 PRINTS Transforming protein P21 ras signature 33 49 - -
Sto12g0818 210 PRINTS Transforming protein P21 ras signature 50 72 - -
Sto12g0818 210 PRINTS Transforming protein P21 ras signature 112 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0818 Sto-Chr12 5146559 5150189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0818 10 130 EF-hand Containing Proteins AT5G27540 23.140 8.89e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0818 K04392 - jre:108991182 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0818 12 5146559 5150189 Sto12g0818 12 5146559 5150189 ECH