Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0813 ATGATGAGTGACTATACTGTGGAGACAATAAATGATGGGCTCAGTGAATTCAATGTGGAGTTCCATGGTCCAAAAGAAAGCCTTTATGAAGGTGGAGTCTGGAAAATTCGTGTTGAGCTTCCCGATGCTTATCCATACAAATCCCCTTCTATTGGATTTGTTAACAAGATATTCCACCCAAATGTTGATGAGCTATCTGGCTCTGTATGCTTGGATGTCATTAACCAATCATGGAGTCCAATGTTCGATCTTTTAAATGTCTTTGAAGTTTTTCTTCCACAACTCTTGCTTTATCCAAATCCTTCAGATCCTCTCAATGGTGATGCAGCATCATTAATGATGAAAGATCGAAAGCTGTATGatcaaaaagttaaagAATATTGTGAGCGGTATGCAAAGAAGGAAAACATTACAAACCCTACAGCTGATGAGGAGAGTGGAGATGAGGATGATATCAGTGAAGATGAATGTGGATCCAGTGAAGATGACATTCCAGGCCATGCTGATCCCTGA 513 0.3918 MMSDYTVETINDGLSEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNPSDPLNGDAASLMMKDRKLYDQKVKEYCERYAKKENITNPTADEESGDEDDISEDECGSSEDDIPGHADP 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0813 170 MobiDBLite consensus disorder prediction 142 159 - -
Sto12g0813 170 SMART ubc_7 1 133 - -
Sto12g0813 170 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 1 170 - -
Sto12g0813 170 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 133 IPR000608 -
Sto12g0813 170 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 58 74 IPR023313 -
Sto12g0813 170 MobiDBLite consensus disorder prediction 134 170 - -
Sto12g0813 170 CDD UBCc 1 128 IPR000608 -
Sto12g0813 170 Pfam Ubiquitin-conjugating enzyme 5 127 IPR000608 -
Sto12g0813 170 SUPERFAMILY UBC-like 4 139 IPR016135 -
Sto12g0813 170 Gene3D Ubiquitin Conjugating Enzyme 1 146 IPR016135 -
Sto12g0813 170 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0813 Sto-Chr12 5121553 5123186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0813 4 100 Miscellaneous Gene Families AT3G17000 24.752 1.24e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0813 K10576 - zju:107418449 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0813 12 5121553 5123186 Sto12g0813 12 5121553 5123186 ECH