Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0774 ATGAATCTGCTTACAATCTTACGTGTGTGTATACTCTGTTGGGTATTTTCACTACTGAGTTCCACAACAAAATGTGCAAGTTCAGATGTCTCTGTGAAATTCTTGAGGGCTCCCCATGCATTCTCGCACTTGAGCTCAGCTACATTTGCTTTTCAAGCTCTTGATTCTGGTAATGGAGGCCCTTGCACAAATTGTACCCTCACTTGCAAGCTTGATGATGGGATTGCATCAGTTTgtaaagcaagaagagtcaccTACTCAAGCTTGAGGGATGGAAACCACACTTTTGAGGTCTGCACCAATGGGCCTCAAGGACTAATCGGCTGTGCTAGCCATAACTGGACTGTTGATACGGTTCCCCCAACAGCATATGTTACTGCATCAACATCTTTCACAAGTGCTTTAAATGTTTCAGTAAACATATCTTTCAGTGAACCTTGCATAGGTGGAGGAGGTTTCGGATGCAAGTCTGTGAATGCTTGCAATGTTCTGGTCTTTGGTGCTGGCGAGGTCATACCGTCTTCCTTCACTGTTTTGCAGCCCAACCTCAAGTATTCTCTTCTCATTAGTTTGCCCTCTAAGGTTCAATACGGGCGGGCAATCGTTCTAATGGATAGGAATTTCTGTACTGACATTGCTGGTAACAGCTTTACAAGAACTCCAAATTCAAGTGTTTATGTACGTTTTGATAGGAGATGGGACTATGTAGACATGAGGACTCATTTACCAGAACGGCTACTTCAACTTAACAGTGAAACTAGAACAGTACTAGCAACTAATGACTATAATAAGCTAAAAGTGTATTTGTACTTCTCAACACCAGTTCTGAATTCCTCGACGGAAATGATTACGCGTCTCAGCATTAATCATGGTTCACTTCTTCCAATTAGCGGGAAAAGTAATGGAAATCGGAGATTTGGATTCATGATTGCTAATATATCCTCAATTAGTATAATCTCAGTGAGCTTCAATTCAACATCTATAATAGGCAGACAAGGGATTCAAGTTGCTCCAGTTTCACCGGTTACTTTCCTTTACGATTCTGAGAGGCCAGCTCTGAAGTTGAGTACATATAGTATGAGAACAAGAGAACACAATGTCCAGATATTAGTCAAATTTTTGAAGCCTGTTTTTGGATTCAATTCCTCATGCATATCAATCTTTCATGAAATAAGTAGGAGCACATACATTATTGAGATACAAGCAGATAATGATCTTCTATCTGTCCGTGTTCCTGAGAATGTAACTCATGATGTTTCTGGAAACAAAAATTTGGCATCCAATGTTCTAGAAGTGAGGCACTACTCCATACCTTTGATTTCCAAAGTGATTTCTGCATTTGCAACTGCTTCTTTTGTGTTGACCTCTCTTGCTGCGGGGCTGCTCACTGTTTCAACCGCAAGCCTTCAATATTTCGGTGCATTTTCGAGACCGTCTTCTTTCTTGACTGCTGATCCTGCAAGAAGTATTTTTAGAATTATTTGCCACATTCAGATCTTTGCATTGTCTAGATGGTTAGCAGTTAAGTTGCCGGTTGAGTTTTATGAATTTTCCAAGAATTTGCAATGGACTATACCTTATTTTTCTGTCCCATGGGAAAATAGACATATGCATCTGCTTTTGGTAGGCTCTAATCCTTTTGGGACTTCTAATCCCTTCGTCTCCAAAGTTCCAGTGACAATCCCAAGCAATAAGTTTATAGATAGTTTGAATAACTCTGCTTCAGTATATGGGTCACCTCTTACTTCTTCCGAGTACCAGTCATATTTTGAGAGCCAAAATATGCAACCAAAAGCTGAATTTATTAGGGATTCACTACACTCCAGTGGGTGGACGGATTTTTATAGAAGCATGTTCTGGTTAGCCGTGATCTACGGCGGATTGATGGTTCTGCATgcttttctcttatttattttgaaattcagGAAGAGAAATTCTGAAAAACCAGGGAAATATGGAGCTCTCACTTTCCCTAGGTTTGAGATTTTTCTTCTGTTTCTTGCACTGCCTAGCATTTGCAAGGCCTCTACTGCCCTTATAAGAGGAGGAGCACACTCAGCAATGGTGATTGGCATTCTGCTGTTGATTTTGGTGTCGTTTGTGCTTCTAGCCTTGTTCTTGTTCCTCTCAATTGGAATTACACTTGGGAAACTACTTCAGTACAAGGAAGTCCATCAGGAAGGCCAGAAATTTCACTGGTATCAAGAGCTTGTGCGAGTAACTCTAGGACCAGGTAAAAGAGGCCAATGGACATGGAAAGAACTACCAAACTCTGTTCATCTAACCATCTTTGGCCCTCTATTTGAAGATCTGAGAGGCCCTCCAAAGTACATGCTTACACAGATTGCCCGTGGCCTTCCTTCGAGTCAGAGTGATCGGATCATTGCCTCTGACGATGAAACAGAAGATGCAGAAGCACCTTTCATCCAGAAGTTGTTTGGGATTCTCAGAATATACTATGTGCTTCTTGAATCCATAAGAAGAGTTTCACTGGGGATTTTGGCAGGTTTCTACAAGGAGACTTCTGAGTCTTCAAAAACTCCCGTAATCATCATACTCTCTATATCTGCATTTCAGCTTTTCTTCATGGTGCTGAAGAAGCCATTCATAAAGAAAAGAATTCAGTTGGTTGAGATCATCTCACTCGCCTGTGAAGTTGCTCTATTTGCTACTTTCTTAGTTCTCTTCAACAAGGATTTTCCAGTCAAAACTGAGAGTAAAATTGGAATCTTTATGCTTATTCTGTTCCTACTGGAGTTCTGTGCACAGATTATGAATGAGTGGTATTCTTTATATAGGCAGACAAGGGTGCTAGACCCTGAAGATAAGTCATTCTTGAGAGGCTTGAAAATTGCTTCCATTGGCTTTCTCTTCTACTTCACCCCACAGAGATGCATCAAGAACTTGGAAACACAGTTCCCGAAAGATCGCGGAGAAACTAGGGATATTGCAATCCCAGGTGATAGATTCAGAAGCCCTGGAAGTAGGAGCTCAGGCTCAAATGATAAACCATGGCTGAAGCAATTAAGAGAGCTTGCAAAGGCTAGTTTTGGAAAGGAAGGAAGTGGTACTACAAATGATCCTTCCAGTAGTAATACTAAATGGAGTGGAATATGGGGCACTAGAAGGAGTGGAAGCTCTTCTATGAGCTCATCTTCTGATTACAAGTCAAAACCAATGAAGCTCCGATTTGTATGCCCATGCCACACAATCTCCGCCAGCGTTCAATCGTCACCTTCGCCACCACCGGTGGCGGAAGACGCCGTCGTAGCCAGACTTATTCTCGAATCAGACACACAATCCctatccgaaaccctaaacgaaTCCACTTTCCGATGGAATTCAGACCTGGTAGACAAGGTCCTCAAACGCCTGTGGAACGACGGACCCAaagcaatgcaatttttcaagCACCTAGAACGCATCCCGACCTATACTCATTCCTCGTCGTCCTTTGATCACGCCATTGACATCGCCGCTCGTATGCGTGACTACAAGTCTGTTTGGACCCTGGTTGCCCGAATGCGAGCTTGCCGGGTCGGACCAAACCCACGAACTTTTGCGATCATCACTGAGAGGTTTGTCGCAGCTGGTAAAGCAGATAAAGCTGTAAAGATTTTTCTGTCAATGCACAAACATGGATGTCGACAGGATTTGAATTCTTTCAATACGATTCTTGATGTGTTGTGCAAGTCCAAACGAGTCGAGATGGCTTATAATTTGTTCAAGATTTTCAAGGGTAGATTTAAGGCTGATAGTATCAGTTATAACATAATTGCGAATGGTTGGTGCTTGATTAAGCGAACGCCTAAAGCTTTGGAGGTTATGAAGGAGATGGTAGAGAGGGGATTGACTCCAACTTTAACTACGTATAATATATTGCTTAAAGGGTATTTTAGGACTGGTCAGCTGAAGGAAGCTTGGGATTTCTTTTTGGAGATGAAGAAGAGGAAATGTGACATTGATGTTGTTACTTATACTACCATGGTTCATGGGTTTGGTGTTGCGGGTGAAATTAAGAAAGCGAGAAAGGTTTTTGATGAGATGGTTAAGGATGGTGTTCTTCCTTCAGTTGCAACATACAATGCCTTGATTCAGGTTTTATGCAAGAAGGATAGTGTGGAAAATGCTATATTGGCCTTTGAAGAGATGGTGAGGAAGGGCTATGTGCCTAATTCGATTACTTACAATGTAATTATCAGAGGTTTGTGTCATTCAGGTGACATGCAAAGGGCCATGGAATTTATGGTGAGAATGAAGGACGATGACTGTCAGCCAAATGTTCAGACATATAATGTCATGATCCGATACTTCTGCGATGCTGGGGAGATTGAAAAGGGTTTGGAAATGTTTGAGCAGATGAGAAATGGGTCATGCTTGCCCAATCTGGACACGTATAACATTCTGATTAGTGCCATGTTTGTGAGGAAGAAATCAGATGATTTAGTTGTGGCTGGGAAGTTGTTGATGGAGATGATTGATAGAGGATTCCTGCCTCGAAATACAACTGTACAACAGCCTAAAGAAGTAAAGAAAGATCATTCATATTTCGGTGCCTCAGAAGTTACATCAGGCAAGCAAGCCATGGCAAAAGCTCTATCTTCCTATTGCTCCGCAATTTCCCCCTCCTCGTCTTCCTCTACTCATCGATTTTTCTGCTCAAGCCTAAAACTCCGAACATTTTCGTCCGTACATTCATTCCCTCCCATCAAGCACAGGAGGTTCGCTGTTTCTCAGAATGCACGCACACCAATCAGTTCGGTCAGCGAGTTGATAGAATCGTTGATAAATGGGGTTGATTTAACGGAAGCCGAAGCCGAAGAATCTCTTGAATTCTTATTGAACGAGGCGAATGAAGCATTGATCAGTGCTGTTCTTGTGCTTTTGAGGGCCAAAGGAGAGACTTTTGAAGAAGTTGCGGGACTAGCAAAAGCTATGATCAAACGTGCCAGGAAGGTTGAAGGTTTAGTTGATGCAATTGACATCGTTGGAACTGGAGGTGATGGTGCAAACACTGTCAACATTTCAACAGGGGCTTCAATCCTTGCTGCAGCTTGTGGTGCCAAAGTTGCAAAGCAAGGAAATCGTTCAAGTTCTTCTGCATGTGGAAGTGCTGATGTATTAGAAGAACTGGGAGTGGCTATTGACTTAGACCCTGAGGGAGTATCAAGGTGTGTGAATGAAGCAGGCATTGGTTTTATGATGTCTCCAAAGTACCACCCGGCTATGAAGATTGTCAGCCCTGTTAGAAAAAAACTGAAAGTAAAAACTGTGTTCAATGTATTGGGTCCCATGTTAAATCCAGCACGGGTACCTTTTGCAGTTGTTGGAGTATTCACAGAAGACTTGgtCTTCAAAATGGCTAATGCGCTACAAAGATTTGGCATGAAAAGAGCTTTAGTTGTTCACTCTGAAGGTTTGGATGAAATGAGTCCTTTAGGACCTGGTCTAGTACTTGATGTTACTCCAGAAAGGATTGATAAGTTCTCGTTTGATCCATTGGATTTCAGCATTCCTCGATGCAGTCTCGAGAACTTAAAAGGTGGTGGCCCAGAGTACAATGCAGAAGTTCTGAAGCGTGTTCTAGCTGGAGAGAGAGGACCTATTGCTGATGCTTTTGTGAGTATCCTAGACTTCTCTGATGATGACACCTCTGAACTAGTGATGGGGAGGGACTGGCCTTGA 5685 0.4174 MNLLTILRVCILCWVFSLLSSTTKCASSDVSVKFLRAPHAFSHLSSATFAFQALDSGNGGPCTNCTLTCKLDDGIASVCKARRVTYSSLRDGNHTFEVCTNGPQGLIGCASHNWTVDTVPPTAYVTASTSFTSALNVSVNISFSEPCIGGGGFGCKSVNACNVLVFGAGEVIPSSFTVLQPNLKYSLLISLPSKVQYGRAIVLMDRNFCTDIAGNSFTRTPNSSVYVRFDRRWDYVDMRTHLPERLLQLNSETRTVLATNDYNKLKVYLYFSTPVLNSSTEMITRLSINHGSLLPISGKSNGNRRFGFMIANISSISIISVSFNSTSIIGRQGIQVAPVSPVTFLYDSERPALKLSTYSMRTREHNVQILVKFLKPVFGFNSSCISIFHEISRSTYIIEIQADNDLLSVRVPENVTHDVSGNKNLASNVLEVRHYSIPLISKVISAFATASFVLTSLAAGLLTVSTASLQYFGAFSRPSSFLTADPARSIFRIICHIQIFALSRWLAVKLPVEFYEFSKNLQWTIPYFSVPWENRHMHLLLVGSNPFGTSNPFVSKVPVTIPSNKFIDSLNNSASVYGSPLTSSEYQSYFESQNMQPKAEFIRDSLHSSGWTDFYRSMFWLAVIYGGLMVLHAFLLFILKFRKRNSEKPGKYGALTFPRFEIFLLFLALPSICKASTALIRGGAHSAMVIGILLLILVSFVLLALFLFLSIGITLGKLLQYKEVHQEGQKFHWYQELVRVTLGPGKRGQWTWKELPNSVHLTIFGPLFEDLRGPPKYMLTQIARGLPSSQSDRIIASDDETEDAEAPFIQKLFGILRIYYVLLESIRRVSLGILAGFYKETSESSKTPVIIILSISAFQLFFMVLKKPFIKKRIQLVEIISLACEVALFATFLVLFNKDFPVKTESKIGIFMLILFLLEFCAQIMNEWYSLYRQTRVLDPEDKSFLRGLKIASIGFLFYFTPQRCIKNLETQFPKDRGETRDIAIPGDRFRSPGSRSSGSNDKPWLKQLRELAKASFGKEGSGTTNDPSSSNTKWSGIWGTRRSGSSSMSSSSDYKSKPMKLRFVCPCHTISASVQSSPSPPPVAEDAVVARLILESDTQSLSETLNESTFRWNSDLVDKVLKRLWNDGPKAMQFFKHLERIPTYTHSSSSFDHAIDIAARMRDYKSVWTLVARMRACRVGPNPRTFAIITERFVAAGKADKAVKIFLSMHKHGCRQDLNSFNTILDVLCKSKRVEMAYNLFKIFKGRFKADSISYNIIANGWCLIKRTPKALEVMKEMVERGLTPTLTTYNILLKGYFRTGQLKEAWDFFLEMKKRKCDIDVVTYTTMVHGFGVAGEIKKARKVFDEMVKDGVLPSVATYNALIQVLCKKDSVENAILAFEEMVRKGYVPNSITYNVIIRGLCHSGDMQRAMEFMVRMKDDDCQPNVQTYNVMIRYFCDAGEIEKGLEMFEQMRNGSCLPNLDTYNILISAMFVRKKSDDLVVAGKLLMEMIDRGFLPRNTTVQQPKEVKKDHSYFGASEVTSGKQAMAKALSSYCSAISPSSSSSTHRFFCSSLKLRTFSSVHSFPPIKHRRFAVSQNARTPISSVSELIESLINGVDLTEAEAEESLEFLLNEANEALISAVLVLLRAKGETFEEVAGLAKAMIKRARKVEGLVDAIDIVGTGGDGANTVNISTGASILAAACGAKVAKQGNRSSSSACGSADVLEELGVAIDLDPEGVSRCVNEAGIGFMMSPKYHPAMKIVSPVRKKLKVKTVFNVLGPMLNPARVPFAVVGVFTEDLVFKMANALQRFGMKRALVVHSEGLDEMSPLGPGLVLDVTPERIDKFSFDPLDFSIPRCSLENLKGGGPEYNAEVLKRVLAGERGPIADAFVSILDFSDDDTSELVMGRDWP 1894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0774 1894 MobiDBLite consensus disorder prediction 1017 1055 - -
Sto12g0774 1894 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1252 1286 IPR002885 -
Sto12g0774 1894 Pfam PPR repeat 1254 1284 IPR002885 -
Sto12g0774 1894 Pfam PPR repeat 1221 1244 IPR002885 -
Sto12g0774 1894 Pfam PPR repeat 1194 1215 IPR002885 -
Sto12g0774 1894 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1287 1321 IPR002885 -
Sto12g0774 1894 Pfam Glycosyl transferase family, helical bundle domain 1590 1649 IPR017459 -
Sto12g0774 1894 Gene3D Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 1656 1876 IPR035902 -
Sto12g0774 1894 SUPERFAMILY HCP-like 1228 1388 - -
Sto12g0774 1894 Gene3D Tetratricopeptide repeat domain 1289 1373 IPR011990 GO:0005515
Sto12g0774 1894 Gene3D Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 1577 1654 - -
Sto12g0774 1894 Gene3D Tetratricopeptide repeat domain 1374 1547 IPR011990 GO:0005515
Sto12g0774 1894 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 1588 1653 IPR036320 -
Sto12g0774 1894 PANTHER TRANSMEMBRANE PROTEIN 13 1062 - -
Sto12g0774 1894 Pfam Glycosyl transferase family, a/b domain 1658 1871 IPR000312 GO:0016757
Sto12g0774 1894 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1183 1217 IPR002885 -
Sto12g0774 1894 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1392 1426 IPR002885 -
Sto12g0774 1894 Pfam PPR repeat family 1287 1333 IPR002885 -
Sto12g0774 1894 Pfam PPR repeat family 1426 1473 IPR002885 -
Sto12g0774 1894 Pfam PPR repeat family 1356 1405 IPR002885 -
Sto12g0774 1894 TIGRFAM PPR: pentatricopeptide repeat domain 1430 1462 IPR002885 -
Sto12g0774 1894 TIGRFAM PPR: pentatricopeptide repeat domain 1290 1322 IPR002885 -
Sto12g0774 1894 TIGRFAM PPR: pentatricopeptide repeat domain 1324 1357 IPR002885 -
Sto12g0774 1894 TIGRFAM PPR: pentatricopeptide repeat domain 1360 1392 IPR002885 -
Sto12g0774 1894 TIGRFAM PPR: pentatricopeptide repeat domain 1394 1428 IPR002885 -
Sto12g0774 1894 TIGRFAM PPR: pentatricopeptide repeat domain 1254 1287 IPR002885 -
Sto12g0774 1894 MobiDBLite consensus disorder prediction 977 1003 - -
Sto12g0774 1894 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1357 1391 IPR002885 -
Sto12g0774 1894 TIGRFAM trpD: anthranilate phosphoribosyltransferase 1592 1868 IPR005940 GO:0000162|GO:0004048
Sto12g0774 1894 MobiDBLite consensus disorder prediction 1019 1055 - -
Sto12g0774 1894 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1462 1499 IPR002885 -
Sto12g0774 1894 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1322 1356 IPR002885 -
Sto12g0774 1894 Gene3D Tetratricopeptide repeat domain 1126 1282 IPR011990 GO:0005515
Sto12g0774 1894 Hamap Anthranilate phosphoribosyltransferase [trpD]. 1590 1894 IPR005940 GO:0000162|GO:0004048
Sto12g0774 1894 PANTHER - 13 1062 - -
Sto12g0774 1894 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1427 1461 IPR002885 -
Sto12g0774 1894 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 1658 1874 IPR035902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0774 Sto-Chr12 4846131 4857726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0774 1156 1513 Miscellaneous Gene Families AT4G11690 28.453 2.79e-46 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0774 - - gmx:100801150 1476.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0774 12 4846131 4857726 Sto12g0774 12 4846131 4857726 ECH