Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0737 ATGAAGCGTGTGACGGCAATTTATGGTTCTCTCAGATTCGCTAATTCGTTTTTCGTTAGTCGAGTTACCATTACTCGATCACTCAGCCACCAGGTGACACGATTCTCTCTTTATACTTCTCCGCTTGCGGCTCGGTCTCTTGATTTTCATTATCCAAGCTTTCATCAAAAGCTATACTTATCATCGAAACCTAACTCGATTTCCGAGCTTCTTTTGGCCAATGATTGGTCCGATGAACTGGAACACGAGTTAGAAAAATCTTGCCCATCTCTGACGCATGAAACAATTATATACGTCCTCAAGAAGCTCGATAAAAGTCCTCAAAAAGCTTTGAATTTTTTCATCTGGGTGAGTGAGAAAGACACATTTACACCAAGTTCGTCTATGTATAGCTTAATGCTTAGGATTTTAGCGAATAAGCAGACAATGAAACATTTTTGGACTACTCTAAGGGAGTCGAAGGAAAAGGGTTCATATATTGACGAGGAGACATATCTGACAATTTTGAGAACTCTTAAAAAGGCAAAGATGGAAAGTGACTGTGTGGCTCTGACTCACTTCTATAAGCGGATGCTTGAGGAAAATGCTATGGGCTGTGTTGTGACCAAGGTGGTTGACATCATTTCAGGGTCAGAATGGTCGATTGATGTTGAGAATGATCTGGCAAAGCTTAAAATTCAGCTGTCGGATAATTTTGTAATAAGAGTTTTGAAAGAACTTCGTCAATGCCCTCTAAAAGTTTTCAAGTTCTTTCATTGGGTTGGGAAGCATTCTGATTACAAGCACAATACAGTGACTTATAATGCAACGGTGAGAGTTCTTGCAAGAGATGATTCAATTGACGAATTTTGGAGTATTGTTGAAGAGATGGAGAGTGTAGGTCATGAAATAGATATTGATACTTACATAAAAATATCCAGAAATTTCTTAAAGCACAAGATGATCGAGGATGCTGTCAAACTTTATGAGCTTATGATGGATAGCGCTTATAAGCCATCTATGCAGGATTGCAGTATCCTTTTAAAGTGTATCTCTGGAGGTGATCCCCCGAATTTGCATTTAGTAGACAGAGTTGTAAAGAAATATGAGTCAACCGGGCACACGCTCTCTAAGGCAATGTACGATGGAATCCACAGGTCATTGACAAGCGCTGGGAAATTTGATGAAGCTGAACAGATTGTTGAGGTTATGGGAAAAGCTGGATATGAGTCTGATAACATCACCTACAGTCAATTGGTGTTTGGACTTTGTAAGGTGAGAAGGCTTGAAGAAGCATGTAAGGTGCTGGATAAGATGGAAGCTTGTGGATGCATCCCTGATATCAAGACTTGGACTATCTTGATCCAAGGGCATTGTGCGGCCAATGAAGTTGATAAGGCGTTACTTTGTTTTGCTAAGATGATTGAGAAGGGCTGCGAAGCAGATGCTGATCTGTTGAACGTTCTTGTTGATGGTTTTCTTAATCAAAACAAAATAGATGGTGCATACAATTTGCTGGTAGAGATGGTTAGAAAGTGTCGTATATCTCCATGGCAAGCTACATACAAGAAGCTGATTGAAAAGCTATTGGAGAGGATGAAATTCGATGAGGCACTGGACCTTCTTCGTTTGATGAAGGAGCATAACTACCCTCCATTTTCTGAACCTTTTGTGCTGTACATTTCTAAGTTTGGGACCGTAGAGGATGCTGCAGAATTTCTGAAGACATTGAGTGTGAAAAGTTTCCCTTCCTATTCAACTTATCTTCATATATTTGAATCCTTCTTCCGAGAAGGTAGACATTATGAGGCAAAGGATCTGCTTTACAAGTGTCCTCATCATATAcgaacacacaataaaatatcTGAACTTTTTGGTTCTTCAAAGAGTAGCGAAgttaatggccaaaaaaaaaattaa 1899 0.3892 MKRVTAIYGSLRFANSFFVSRVTITRSLSHQVTRFSLYTSPLAARSLDFHYPSFHQKLYLSSKPNSISELLLANDWSDELEHELEKSCPSLTHETIIYVLKKLDKSPQKALNFFIWVSEKDTFTPSSSMYSLMLRILANKQTMKHFWTTLRESKEKGSYIDEETYLTILRTLKKAKMESDCVALTHFYKRMLEENAMGCVVTKVVDIISGSEWSIDVENDLAKLKIQLSDNFVIRVLKELRQCPLKVFKFFHWVGKHSDYKHNTVTYNATVRVLARDDSIDEFWSIVEEMESVGHEIDIDTYIKISRNFLKHKMIEDAVKLYELMMDSAYKPSMQDCSILLKCISGGDPPNLHLVDRVVKKYESTGHTLSKAMYDGIHRSLTSAGKFDEAEQIVEVMGKAGYESDNITYSQLVFGLCKVRRLEEACKVLDKMEACGCIPDIKTWTILIQGHCAANEVDKALLCFAKMIEKGCEADADLLNVLVDGFLNQNKIDGAYNLLVEMVRKCRISPWQATYKKLIEKLLERMKFDEALDLLRLMKEHNYPPFSEPFVLYISKFGTVEDAAEFLKTLSVKSFPSYSTYLHIFESFFREGRHYEAKDLLYKCPHHIRTHNKISELFGSSKSSEVNGQKKN 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0737 632 Gene3D Tetratricopeptide repeat domain 65 205 IPR011990 GO:0005515
Sto12g0737 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Sto12g0737 632 PANTHER OS01G0970900 PROTEIN 1 621 - -
Sto12g0737 632 PANTHER OS01G0970900 PROTEIN 1 621 IPR044578 GO:0008380
Sto12g0737 632 Gene3D Tetratricopeptide repeat domain 217 347 IPR011990 GO:0005515
Sto12g0737 632 Gene3D Tetratricopeptide repeat domain 506 632 IPR011990 GO:0005515
Sto12g0737 632 Gene3D Tetratricopeptide repeat domain 351 505 IPR011990 GO:0005515
Sto12g0737 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Sto12g0737 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Sto12g0737 632 Pfam PPR repeat 480 505 IPR002885 -
Sto12g0737 632 Pfam PPR repeat 514 542 IPR002885 -
Sto12g0737 632 Pfam PPR repeat 265 294 IPR002885 -
Sto12g0737 632 Pfam PPR repeat family 415 452 IPR002885 -
Sto12g0737 632 TIGRFAM PPR: pentatricopeptide repeat domain 407 441 IPR002885 -
Sto12g0737 632 TIGRFAM PPR: pentatricopeptide repeat domain 265 298 IPR002885 -
Sto12g0737 632 TIGRFAM PPR: pentatricopeptide repeat domain 443 476 IPR002885 -
Sto12g0737 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Sto12g0737 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0737 Sto-Chr12 4613436 4615334 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0737 374 601 Miscellaneous Gene Families AT4G11690 28.017 7.62e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0737 - - qsu:112012275 860.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0737 12 4613436 4615334 Sto12g0737 12 4613436 4615334 ECH