Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0719 ATGGGTGGATCAGTTTCAAAACGACGGAGCGGGAGGCATCGGTCATCTTCAAGATCTGCTTCACGTTCATGGAATTATCCTCAACCACAAGCACCCTATGTGCAACAAAACCAATATCATGTACCTCAACCTCAAGAATATTTCAGCCCTTCATCTCAAAACTACGGTGGTGGTCATGCTCCTGAGCCGAAAAAGAGGTTAGAGAGGAAGTATTCAAGGATAGAGGACAATTATATTAGCTTGGATCAGGTAACCGAGGCTCTTGCAGGTGCTGGTCTCGAGTCATCCAATCTAATTGTTGGTATTGATTTCACAAAGAGCAATGAATGGACAGGTGCTAGGTCTTTCCAAAGGAGAAGCCTGCATCATATTGGTCATGAACAAAATCCTTATGAACAAGCAATCTCAATCATTGGGAAGACATTGTCTACCTTTGATGAGGATAACTTGATTCCCTGTTTTGGATTTGGAGATGCATCAACACATGACCAAGAAGTTTTTAGTTTCTatccggatgagagattttgTCAAGGATTTGAAGAAGTGTTGAGAAGGTACCGGGAATTGGTTCCTGAATTAAAGCTTGCAGGACCAACATCATTTGCTCCAATCATTGAAATGGCAATCACTATAGTTGAGCAAAGTGGTGGCCAATACCATGTCTTATTGATAATAGCAGATGGACAGGTGACGAGAAGTGTTGACACTGAGCGTGGGCAGTTAAGCACACAAGAAAAACAAACTGTTGAAGCTATTGTGAAAGCAAGTAATTATCCCCTGTCAATCATATTAGTTGGAGTTGGCGATGGGCCATGGGATATGATGAAAGAATTTGATGATAATATACCAGCTCGCGCCTTTGATAATTTCCAGTTTGTGAATTTCACTGAAATAATGTCAAAGAATATGGATCGCTCCAGAAAAGAAACAGAATTTGCACTTTCTGCCCTGATGGAAATACCCTCACAATACAAGGCAACACTTGAACTTAATATTTTGGGTGCTCGCAGAGGGAAAGCTATAGACAGGGTTCCCCTTCCCCCACCTCTATATAATGCTGCATCTCTCAACACTCCGAAAGCTTCCCATCCAAGCAATTTTCGTCCTAGCGCTCCATCTCACTCACAGAGACATGATACTAGCACACATCATCCTGCAAGTTCCGCCTCTGATAATCATGTTTGTCCCATTTGCCTCACTGAACCTAAAAATATGGCCTTTGGTTGCGGACACCAGACATGCTGTGAGTGCGGACAAAATCTTGATACATGCCCCATTTGCAGGAGTGCCATAGACACTCGAATAAGACTTTATTAG 1317 0.4191 MGGSVSKRRSGRHRSSSRSASRSWNYPQPQAPYVQQNQYHVPQPQEYFSPSSQNYGGGHAPEPKKRLERKYSRIEDNYISLDQVTEALAGAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGHEQNPYEQAISIIGKTLSTFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCQGFEEVLRRYRELVPELKLAGPTSFAPIIEMAITIVEQSGGQYHVLLIIADGQVTRSVDTERGQLSTQEKQTVEAIVKASNYPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKETEFALSALMEIPSQYKATLELNILGARRGKAIDRVPLPPPLYNAASLNTPKASHPSNFRPSAPSHSQRHDTSTHHPASSASDNHVCPICLTEPKNMAFGCGHQTCCECGQNLDTCPICRSAIDTRIRLY 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0719 438 MobiDBLite consensus disorder prediction 17 56 - -
Sto12g0719 438 CDD RING-HC_RGLG_plant 394 438 IPR045317 GO:0061630|GO:0070534
Sto12g0719 438 SUPERFAMILY RING/U-box 389 434 - -
Sto12g0719 438 PANTHER COPINE FAMILY PROTEIN 1 1 438 - -
Sto12g0719 438 Coils Coil 64 84 - -
Sto12g0719 438 MobiDBLite consensus disorder prediction 1 65 - -
Sto12g0719 438 MobiDBLite consensus disorder prediction 355 389 - -
Sto12g0719 438 Pfam Zinc finger, C3HC4 type (RING finger) 392 433 - -
Sto12g0719 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 438 IPR013083 -
Sto12g0719 438 SUPERFAMILY vWA-like 97 279 IPR036465 -
Sto12g0719 438 ProSiteProfiles Zinc finger RING-type profile. 395 428 IPR001841 -
Sto12g0719 438 MobiDBLite consensus disorder prediction 352 391 - -
Sto12g0719 438 PANTHER RING-FINGER PROTEIN 1 438 - -
Sto12g0719 438 SMART VWA_4 95 298 IPR002035 -
Sto12g0719 438 Pfam Copine 120 333 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0719 Sto-Chr12 4542987 4545966 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0719 K16280 - gmx:100809850 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0719 12 4542987 4545966 Sto12g0719 12 4542987 4545966 ECH