Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0710 ATGAAGGAGGCTATGGAGATGAGGATGGTGGGGTGGGTGTGTTTCGGATGGATTGACAAGTGTGACCATCTAGAAGTTTCTGAAGATCCATTCGTGGGTAGATGGTTGAGATATGATGATCCACTTGCGATTGGTCGTCTCCGTAAATATTACAAAGCGCCTGCAAATAGGTTTAGGTATAAGGAACACGTAGCTTTATGTGATTCAGCGGGTCCATCATATCTTGGGTGGACCCCTCCACTCTCTTCAGTGGCCCCACCAGTTACAACTTACATGAAAATGAATGGCAATGGCGCAACCAATACGGTGTCGCATAGAATCAGCTTTGACTGCGTTGCGTCcctcaaaaccctaacccctcaCATCACCTGCCTGGCGCTCCACCGTAACCTTCTCTACGCCGCTTCCCTCAACCTCATCAACGTCTTCCATGCTTCCCACTACACCCACATCGACGCATTCAACCACAATAATCCCTCCTCCGGCTTCGTCAAGTCCATCGCATTCGCCGATTCCAAGGTCTTCACCGCCCACCAAGATTGCAAGATTCGCGTCTGGCTCATCACTCCCCACTCCAAACGACACCGTCTCCTCCTCACCCTCCCCACCCTCAACGACCGCTTGCGTCGCTTCATGCTTCCCAGCAACTACGTCCACGTTCGCCGCCACAAGCGCAGCCTCTGGATTCAACATTGTGATACCGTCTCCGGCTTGGCGCTGAACCAGGGGCTAATGTACTCCGTTTCTTGGGATAAGAGCTTCAAGATCTGGGACGTGTCCGGTAATAATTACCGGTGCGTGGAATCAGTGAAGGCACACGAAGACGCCATAAACGCCGTCGCGGTTTCGAGGGGCGGGACGGTGTATACGGCTTCGGCGGACGGGagtattagggtttgggagaGGGATGAGAAGGTGAACAAGTATAGATTAGTGAGTTGTGTGGAGAAGCAGAAATCGACGGTGAACGCGCTGGCATTGAAGGGCGATGGGAGGGTGGTGTTTTCGGGTGGTTGCGACGGTGCGATTTGCATGTGGGAGAGGAAGGAGGGGTCGTTAAACGACATGGTTTTGGTGGAAACGGTGAGGGGTCACAGTGGGGCGATTCTGTGTTTGGTGAAAGTGGAGGGTTGGGATTGGATAGTGAGTGGGTCAGGGGATCAGACGGTTAGGATTTGGGGAAAGGAAAGGGGAAGAAGTGGGTATGTTTGCAAAGCAGTGTTAGAAGGTCACGAGAAACCCATAAAGTCATTAGTGGCAGTTTCATCATCAGGAGGTGCCGCAAACGGCGTCGTCACACTCTTTAGCGGAAGCCTTGACGGGGATATTAAGGTGTGGAAACTGGAAGGTGTTGGTTTGAAATTTTAA 1368 0.5066 MKEAMEMRMVGWVCFGWIDKCDHLEVSEDPFVGRWLRYDDPLAIGRLRKYYKAPANRFRYKEHVALCDSAGPSYLGWTPPLSSVAPPVTTYMKMNGNGATNTVSHRISFDCVASLKTLTPHITCLALHRNLLYAASLNLINVFHASHYTHIDAFNHNNPSSGFVKSIAFADSKVFTAHQDCKIRVWLITPHSKRHRLLLTLPTLNDRLRRFMLPSNYVHVRRHKRSLWIQHCDTVSGLALNQGLMYSVSWDKSFKIWDVSGNNYRCVESVKAHEDAINAVAVSRGGTVYTASADGSIRVWERDEKVNKYRLVSCVEKQKSTVNALALKGDGRVVFSGGCDGAICMWERKEGSLNDMVLVETVRGHSGAILCLVKVEGWDWIVSGSGDQTVRIWGKERGRSGYVCKAVLEGHEKPIKSLVAVSSSGGAANGVVTLFSGSLDGDIKVWKLEGVGLKF 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0710 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 356 IPR001680 GO:0005515
Sto12g0710 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 301 IPR001680 GO:0005515
Sto12g0710 455 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 106 448 - -
Sto12g0710 455 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 106 448 IPR045182 -
Sto12g0710 455 SMART WD40_4 263 301 IPR001680 GO:0005515
Sto12g0710 455 SMART WD40_4 308 347 IPR001680 GO:0005515
Sto12g0710 455 SMART WD40_4 401 447 IPR001680 GO:0005515
Sto12g0710 455 SMART WD40_4 222 258 IPR001680 GO:0005515
Sto12g0710 455 SMART WD40_4 147 187 IPR001680 GO:0005515
Sto12g0710 455 SMART WD40_4 108 144 IPR001680 GO:0005515
Sto12g0710 455 SMART WD40_4 355 394 IPR001680 GO:0005515
Sto12g0710 455 Gene3D - 97 205 IPR015943 GO:0005515
Sto12g0710 455 Pfam WD domain, G-beta repeat 359 393 IPR001680 GO:0005515
Sto12g0710 455 Pfam WD domain, G-beta repeat 404 447 IPR001680 GO:0005515
Sto12g0710 455 Pfam WD domain, G-beta repeat 265 300 IPR001680 GO:0005515
Sto12g0710 455 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Sto12g0710 455 PRINTS G protein beta WD-40 repeat signature 381 395 IPR020472 -
Sto12g0710 455 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Sto12g0710 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 362 393 - -
Sto12g0710 455 Gene3D - 218 307 IPR015943 GO:0005515
Sto12g0710 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 393 IPR001680 GO:0005515
Sto12g0710 455 SUPERFAMILY WD40 repeat-like 107 447 IPR036322 GO:0005515
Sto12g0710 455 Gene3D - 308 455 IPR015943 GO:0005515
Sto12g0710 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0710 Sto-Chr12 4494851 4502528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0710 256 447 Acyl Lipid Metabolism Gene Families AT3G18860 27.638 2.80e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0710 - - aprc:113874855 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0710 12 4494851 4502528 Sto12g0710 12 4494851 4502528 ECH