Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0708 ATGATGGCCAAGTCTTCTAAATCACAAGAAGAAATTGCAAATAAAGCTATACAGCACGCTTTGAAGGCTCTGCGGAAGCGGCATTTGGCTGAAGAAGGTGCTCATGCTCCGGCTTTCGAAGCTCTTTCCAGACCCATCGCTTCCCAGGGCTCTGAATGGAAAGAGAAAGCAGAGAATCTGCAATTAGAACTTCAGCAATGCTACAAAGCCCAATCTCGGCTGTCTGAGCAACTGGTTGTTGAAGTAGCTGAATCCAGAGCAGCAAAATCTTTGGTTCAAGAGAAAGAGACTGCAATCAATGATCTGCAAAAGGAGTTGACAGAATTGAGGGATGAGTGCTCTCAATTAAAGATAgacttaaaagaaaagattCAAGCTTTAGAATTGGTTGTGAGTGAAAATACAGAACTTAAAGCACAATTGGAGCAGATGACTCTTAAAGCCAAGAATACTGAGGCtgaaaataaaatgttagttGACCGGTGGATGTTGGAAAAGATGAAGGATGCTGAACGCCTAAATGAGGTAAATGCACTGTATGAAGACATGGTTGAGCGGCTAAAGGCGAGTGGTTTAGAAAAGCTTGCAAGGCAGCAAGTAGATGGCATAGTTCGACGAAGTGAAGAAGGTGCTGAATTCTTTTTAGAGCCAACCAACCCATCCACATGTAAATACAGGCTGCATGCCCATGAAGGTGGTTGTGCTTCCGCTTTGTTTGAGTACAACTCTAGTAAATTGATTACTGGGGGACAGGACCGGTCAGTTAAAGTGTGGGACACAAATACAGGATCCTTAAGTTCTAATCTTCACGGATGCCTTGGCTCTGTATTAGATCTCACAATCACCCATGATAATCAATCTGTTATTGCTGCAAGCAGCTCTAACAACTTATACGTGTGGGATATCAACTCAGGCCGGGTTCGTCATACCCTTACTGGCCATACAGATAAAGTGTGTGCTGTTGATGTCAGTAAGATGTCAAATCGTCATGTTGTCAGTGCAGCATATGATCGTACTATCAAAGTTTGGGACTTGGTAAAAGGTTACTGCACTAacacaataattttttacaGCAACTGCAATGCTCTTTGCTTCAGCATGGATGGACTTACCATATTTTCTGGTCATGTTGATGGAAATCTTCGATTATGGGATATTCAGACTGGAAAGCTACTTAGCGAGGTTGCAGCCCATTCACAAGCTGTCACTTCAATATCTCTTTCTCGAAATGGAAATGTTGTATTGACCAGCGGAAGGGACAATTTGCACAATTTGTTTGATGTGCGATCTCTGGAGGTTTGCAGCACACTAAGAGCCACTGGAAACAGAGTGGCATCTAATTGGAGCCGCTCCTGTATAAGTCCTGATGACAATTATGTTGCTGCTGGATCTGCCGATGGATCTGTCTATATTTGGTCGGTATCTAAGGCTGATATAGTCAGCACTCTGAAGGAACACTCTTCTTCTGTCCTGTGTTGTACATGGAGTGGGGTTGGAAAACCACTCGCTTCAGCTGACAAGAATGGGGTTACTATCAGATAA 1542 0.4235 MMAKSSKSQEEIANKAIQHALKALRKRHLAEEGAHAPAFEALSRPIASQGSEWKEKAENLQLELQQCYKAQSRLSEQLVVEVAESRAAKSLVQEKETAINDLQKELTELRDECSQLKIDLKEKIQALELVVSENTELKAQLEQMTLKAKNTEAENKMLVDRWMLEKMKDAERLNEVNALYEDMVERLKASGLEKLARQQVDGIVRRSEEGAEFFLEPTNPSTCKYRLHAHEGGCASALFEYNSSKLITGGQDRSVKVWDTNTGSLSSNLHGCLGSVLDLTITHDNQSVIAASSSNNLYVWDINSGRVRHTLTGHTDKVCAVDVSKMSNRHVVSAAYDRTIKVWDLVKGYCTNTIIFYSNCNALCFSMDGLTIFSGHVDGNLRLWDIQTGKLLSEVAAHSQAVTSISLSRNGNVVLTSGRDNLHNLFDVRSLEVCSTLRATGNRVASNWSRSCISPDDNYVAAGSADGSVYIWSVSKADIVSTLKEHSSSVLCCTWSGVGKPLASADKNGVTIR 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0708 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 436 IPR001680 GO:0005515
Sto12g0708 513 Coils Coil 170 190 - -
Sto12g0708 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 353 IPR001680 GO:0005515
Sto12g0708 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 310 IPR001680 GO:0005515
Sto12g0708 513 ProSitePatterns Trp-Asp (WD) repeats signature. 246 260 IPR019775 -
Sto12g0708 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Sto12g0708 513 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 345 - -
Sto12g0708 513 ProSitePatterns Trp-Asp (WD) repeats signature. 372 386 IPR019775 -
Sto12g0708 513 Gene3D - 358 512 IPR015943 GO:0005515
Sto12g0708 513 Pfam Autophagy protein 16 (ATG16) 34 174 IPR013923 -
Sto12g0708 513 Coils Coil 85 161 - -
Sto12g0708 513 SUPERFAMILY WD40 repeat-like 219 510 IPR036322 GO:0005515
Sto12g0708 513 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 9 511 - -
Sto12g0708 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 454 482 IPR001680 GO:0005515
Sto12g0708 513 Coils Coil 57 77 - -
Sto12g0708 513 Pfam WD domain, G-beta repeat 390 421 IPR001680 GO:0005515
Sto12g0708 513 Pfam WD domain, G-beta repeat 360 385 IPR001680 GO:0005515
Sto12g0708 513 Pfam WD domain, G-beta repeat 452 473 IPR001680 GO:0005515
Sto12g0708 513 Pfam WD domain, G-beta repeat 223 259 IPR001680 GO:0005515
Sto12g0708 513 Pfam WD domain, G-beta repeat 307 344 IPR001680 GO:0005515
Sto12g0708 513 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Sto12g0708 513 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Sto12g0708 513 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
Sto12g0708 513 Gene3D - 216 357 IPR015943 GO:0005515
Sto12g0708 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 394 IPR001680 GO:0005515
Sto12g0708 513 PANTHER AUTOPHAGY PROTEIN 16-LIKE 9 511 IPR045160 GO:0000045
Sto12g0708 513 Gene3D - 90 163 - -
Sto12g0708 513 CDD WD40 230 513 - -
Sto12g0708 513 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
Sto12g0708 513 SMART WD40_4 388 427 IPR001680 GO:0005515
Sto12g0708 513 SMART WD40_4 304 344 IPR001680 GO:0005515
Sto12g0708 513 SMART WD40_4 347 385 IPR001680 GO:0005515
Sto12g0708 513 SMART WD40_4 476 511 IPR001680 GO:0005515
Sto12g0708 513 SMART WD40_4 220 259 IPR001680 GO:0005515
Sto12g0708 513 SMART WD40_4 262 301 IPR001680 GO:0005515
Sto12g0708 513 SMART WD40_4 430 473 IPR001680 GO:0005515
Sto12g0708 513 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0708 Sto-Chr12 4485515 4488457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0708 288 500 Miscellaneous Gene Families AT5G08390 23.364 2.30e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0708 K17890 - gmx:100806054 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0708 12 4485515 4488457 Sto12g0708 12 4485515 4488457 ECH