Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0606 ATGGGGATTATTAGTTTAGTTAGTGGGTTAGAAAGTTCTGTTATAATTAGGGGGAATGGTGGGGAGGGTGATACAAAGAAGATGGATGAGGAAGAGAGTGAAAGTTCAGAGTCTGAGAGTGATAATCCATCTTCTTCAACTTCTAGTAGTAGCAGTGATAGTGACGGTAGTTCTAGTGATGATGACGATGTTGAAGATGATGAGGAAGCGGGACAGCAGGAAAAAAGGGAAGTACATACAGAGAACAACGAAGTGGAAGTTGAAGAGGGAGAGATAAAAGATTATAATGGACAAGAGCTGGTTACTGAAACTGCTgtcaatgatgatgatgatgatgatgatgatgatatggaGATAGgcTTGACTCCTGAATTGTCTAAACTTCCGCAGAATCTTCCTCCAGTTCCTCCAGTGAATGTCACATTAGGACCGCATCATCAAATGCTTCCAGTAGGAGTTGTTATGTCGATAATCAATACCCAAGTCATTGTGGAAGGGGTGGAGAAGCATGATCCTCTTAGTGAGGGATCTATTCTCTGGATAACTGAAAGCCGGACTCCGCTAGGTTTGGTTGATGAAATCTTTGGACCTGTCAAGAACCCTTATTATATTGTGAGATACAATTCTGAAAATGAAGTACCCATTTCAATCCATGGGGGCACCTCAGTCTCTTTTGTTCCAGAATTTGCCAAGTATGTGCTTAATAACAAGGATCTTTACAAGAAAGGGTATGATAAATCTGGTTTTGATGATGACGTGTCTGATGAAGAAGAGTTTTCAGATGACGAGAAAGAGGCTGAATGCATGAAGCAAAAAATGAAGATAGGTATCAGTGATCAGAATCCTCAAAAGCAGAAAATCTACAAAAGGAAAGGTTCACAAAAAAGGGGTGCAGGAGGTCCCTACCCTGTCAGACCTACTGCTCCATCACCAGATGATAGAAATTTTTCTACATTTTCAGGCATCAGACGAGGTCCTTCTGGGGCAACTTCAATGGTTCCGCCATTTCCACCCACAAGTGCAGACCGTAATTTAGCTTCAACCGGAGGAGTTTGGACAAATGGGGTACCACTTCAGCAGCCACAGTCTGCTCTGCTTCCTAGTGGACTTCCTCCAAATGGCATACCTTGGTTCCCAGGAAATGTTCAAAATCCGTATCAGTTGCCCATGTCAGGAATGCCATTTCAACAGCAATTAGGTCCTAGTCTGGGATCACTTCCAACAACGATGTTCCCTGGGGTACAACCTAATATATTTGCACAACCTACATACCCACTGGGGCATGTCGGTCAAAATCAGATGACATTTGGGTTGAATTCACACATTCCTCAACTTCAGCCACCACCTGTATTTGCTGGGGGACAAGGTTCTATTCCAGACCATCAATCTCGTATAGGTGCTTCTCCTAATTATGGGAGACAAAATTTTTATCGAGGGGGTAGGGAAGGTTGGCGACCATAA 1461 0.4203 MGIISLVSGLESSVIIRGNGGEGDTKKMDEEESESSESESDNPSSSTSSSSSDSDGSSSDDDDVEDDEEAGQQEKREVHTENNEVEVEEGEIKDYNGQELVTETAVNDDDDDDDDDMEIGLTPELSKLPQNLPPVPPVNVTLGPHHQMLPVGVVMSIINTQVIVEGVEKHDPLSEGSILWITESRTPLGLVDEIFGPVKNPYYIVRYNSENEVPISIHGGTSVSFVPEFAKYVLNNKDLYKKGYDKSGFDDDVSDEEEFSDDEKEAECMKQKMKIGISDQNPQKQKIYKRKGSQKRGAGGPYPVRPTAPSPDDRNFSTFSGIRRGPSGATSMVPPFPPTSADRNLASTGGVWTNGVPLQQPQSALLPSGLPPNGIPWFPGNVQNPYQLPMSGMPFQQQLGPSLGSLPTTMFPGVQPNIFAQPTYPLGHVGQNQMTFGLNSHIPQLQPPPVFAGGQGSIPDHQSRIGASPNYGRQNFYRGGREGWRP 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0606 486 MobiDBLite consensus disorder prediction 1 99 - -
Sto12g0606 486 MobiDBLite consensus disorder prediction 71 96 - -
Sto12g0606 486 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 11 481 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Sto12g0606 486 MobiDBLite consensus disorder prediction 451 486 - -
Sto12g0606 486 Gene3D Probable tRNA pseudouridine synthase domain 123 226 IPR038664 -
Sto12g0606 486 MobiDBLite consensus disorder prediction 39 55 - -
Sto12g0606 486 MobiDBLite consensus disorder prediction 275 314 - -
Sto12g0606 486 Pfam Gar1/Naf1 RNA binding region 149 233 IPR007504 GO:0001522|GO:0042254
Sto12g0606 486 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 11 481 - -
Sto12g0606 486 SUPERFAMILY Translation proteins 148 211 IPR009000 -
Sto12g0606 486 MobiDBLite consensus disorder prediction 56 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0606 Sto-Chr12 3839563 3841870 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0606 K14763 - gmx:102661630 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0606 12 3839563 3841870 Sto12g0606 12 3839563 3841870 ECH