Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0553 ATGGCAGGGATTGGTTTCGAAGATTTGCTGCCTATGATGGCTGACAAACTTGGAGGCGAAGGACTGATAAAGGAGCTGTGCAATGGGTTTGAATTACTGATGGATAAAGAGAAAGGGGTCATCACTCTGGAAAGCTTGAGGACCAACTCTGCTCTTCTGGGTCTCCACGAATTGAAGGAGGATGAGcttgtgatgatgatgaaggaggcAGATCTTGATGGTGATGGTGCTCTTACTCAGATGGACTTCTGCGTTTTGATGTTTAGATTAAGCCCTGACTTGATCAACCATTGCTGCTTTTATCTTGACCAACCTCTTCAAGACCAACTCAATCATCTTGTTCATTAA 348 0.4109 MAGIGFEDLLPMMADKLGGEGLIKELCNGFELLMDKEKGVITLESLRTNSALLGLHELKEDELVMMMKEADLDGDGALTQMDFCVLMFRLSPDLINHCCFYLDQPLQDQLNHLVH 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0553 115 Pfam EF-hand domain pair 37 89 IPR002048 GO:0005509
Sto12g0553 115 SMART efh_1 62 90 IPR002048 GO:0005509
Sto12g0553 115 ProSitePatterns EF-hand calcium-binding domain. 71 83 IPR018247 -
Sto12g0553 115 SUPERFAMILY EF-hand 4 87 IPR011992 -
Sto12g0553 115 Gene3D - 4 110 - -
Sto12g0553 115 ProSiteProfiles EF-hand calcium-binding domain profile. 58 93 IPR002048 GO:0005509
Sto12g0553 115 PANTHER CALCIUM-BINDING PROTEIN KIC 3 111 IPR044205 GO:0005509
Sto12g0553 115 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 3 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0553 Sto-Chr12 3592270 3592617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0553 6 95 EF-hand Containing Proteins AT4G27280 69.231 5.09e-38 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0553 K24345 - gmx:100527206 181.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0553 12 3592270 3592617 Sto12g0553 12 3592270 3592617 ECH