Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0501 ATGGCGGCCGCCGGGCTGTCACCGCCTCCGATCGTGCCtctGATGCGAGTGGCATTCGCAATCGCTTCTCTAGCAGCTATCTCAATCTACTTTGCTGCTCGGTACCGGAGTCGGCGTAAACAGAAGTCTTCTTCGAGTTTATGTTACTTACGTGCCGAAAAAAAGCCACAGTATGCGTTTAAGCGAGTTTTGGCGGATAATTCGTACACTGCGTTCAAGCACTTGAAGCTCAACGACTCTAGCGATGAGAATCCTTCAAATTGTCATCCTTTTGAGGCAGAGATTACTTCATTGCTAGAAAACCCTCAACTCCAATTAGACTATAGTACTGAGATTCAGGACTTGAAGAAGAATGATTCATATGTTTGGGTTGAGACAGAGTTGCAGTTAAAGGAATTGGTCAATGTACTGAGTAAAGAGAACTGTTTTGCTGTGGACACCGAACAACATAACCTACGATCCTTTCTAGGCTTTACTGCATTAGTTCAGGTGTTTCATGGAGCTGACAATGATGTGGTCTGGCTACAGAGAGATTTCCATATATATGTTGTTAATCTATTTGATACTTCAAAGGCATGTGAGGTGTTGTCAAAACCACAGAAATCACTTGCTTATTTACTTGAAACTTATTGTGGCGTcacaacaaataaattatttcagCGTGAAGACTGGAGACAACGCCCCCTCTCAGCAGAAATGGTAGATTATGCAAGAACCGATGcacattatttattatatattgcaAACTGTTTGATCACTGAACTCAAACAATTGGATGAAGAAGACTCTTGTTCCAATGACAAATTCCATTTTCCTCTCGAGGCTAGTCGGCGTTCAAACATGATTTGTTTGCAACTTTTCTCAAAAGAGAATGAAGCTTCTCCGGGAGAATCTGCTGCATTATCATTATTTTCACGTCATGTGAGCAGTGAAAGTTTTCCTTCAGTTTCCAATGAAAACCAGTTTCAGAATTTCGTGAGGCAACTATGTGCGTGGAGAGATCTGATGGCTCGTATTCATGATGAGAGCTTGAAATATGTTTTACCAGACCAGGCAATTGTTGCTTTAGCAAATCAGCCTCCGACCAGTCACTCTGAAATATACAATGTCATAGCTCAGGCTGATATCAACGTGGAAGTGGGTGTCAATTCTTTCTTCCCTTCTCCATCTCCTGTTGTTGGCAGCCACCTAAGTGATATCTATGATTTGCTTGTAGATAATTTGGGTAATACTGGAGATATTTATTCAGTAATTCTTCAGAATGTAAAATATTCAAAACAAGTTTCTCGGAAGGCTTCTCGAGATTTGTTTGTTCAGAAATTCTCTTGTAAATCTCCTGTTTATCATAATTGCCGGATCTATGCTAATGATGGACGACTTCTCTGTTACTGTGATCGGAGGAAGCTTGAATGGTACCTCAGTCGGGATCTGGCCAAACTAATTGATGAAGACCCCCCAGCTATAATGCTTCTTTTCGAACCCAAAGGTCGCCCAGAGGACGAAGATAATGATTTTTATATCCAGAGTAAGCAAAATATATGTGTTGGCTGTGGTGAAGGAAATCACTACTTGCGGTACCGGATTATTCCTTCGTGCTATAGAATACATTTCCCTGAACATTTGAAAAGCCATCGCTCTCATGATATTGTTCTGCTTTGTGTGGACTGTCATGAAGTTGCCCATGCTGCGGCAGAGAAATATAAGAGGAAGATATCAGCTGAATTTGGGATTCCTCTTTATGTCCGTAGGGTAATAGATCCTGCAAATGTGTCTGAAGTAACCTTTGAAGAGGGAGGTGTTTCTCCATTACATTTACGAACAGCTGCCATGGCTCTTTTGCGCCACGGATCAAGAATGCCTCCCAATCGCCGTGATGAACTGACTGAGGTTGTGAAGAGATATTATGGAGGAAGGGAGATATCTGATGAAGATTTAGAAAGAGCTTTGCTAGTTGGCATGAGTCCTCATGAGAGAAGACGATTTGAGAAGAAGAGAGGTTATTCATTTAGACATTCAACAAGATCTTCAGCAGAGACAGTGCTGGAAAACCATGGTCATTGTGCACCCAAAACAGGAATTGAGGATACATCAAATGTTAATGCGCTAGATGGTTCATATGCTACCAAAGCAGCAAGCaatgaagaagatagagaacTTTTTAcagtaaatgatgatgtgggAAACCCCTCTTTAGCTTCTGATATAGCAAATAATGGATCTGTCTCTGCTATCTTAAATGGAAATGTGGGCACGGGTAACACTATGGGTTTTAATGAGAATAGTGCCTCTGCTGTAAATGCTGATGATAGCTGTCTGAGCAGCAGGCCACCAAATGAAGTTGGTGACCTATGCCCCAGAGATGAAGAATCCACTCAAGCTAAACATAATTCAAAACTATCACTCTTAGGACATGGACCACATGGGAAACTAGTTGTAGAACATTTACTAAAGGAATATGGTGAAGATGGCGTTCGTCAGTTTTGTCAaagatggagacaagcttttgttgaagCTGTAAAACCACGTTTTCTACCTGTTGGCTGGGACGTAAAACACAGTGGTAGAAGGGACTTCGGTGAATTCAGTGTATACAACCCTGTCAGAAAAGCATTCCCTGCTCCTGCAACTAGCTAG 2634 0.4028 MAAAGLSPPPIVPLMRVAFAIASLAAISIYFAARYRSRRKQKSSSSLCYLRAEKKPQYAFKRVLADNSYTAFKHLKLNDSSDENPSNCHPFEAEITSLLENPQLQLDYSTEIQDLKKNDSYVWVETELQLKELVNVLSKENCFAVDTEQHNLRSFLGFTALVQVFHGADNDVVWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVTTNKLFQREDWRQRPLSAEMVDYARTDAHYLLYIANCLITELKQLDEEDSCSNDKFHFPLEASRRSNMICLQLFSKENEASPGESAALSLFSRHVSSESFPSVSNENQFQNFVRQLCAWRDLMARIHDESLKYVLPDQAIVALANQPPTSHSEIYNVIAQADINVEVGVNSFFPSPSPVVGSHLSDIYDLLVDNLGNTGDIYSVILQNVKYSKQVSRKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLSRDLAKLIDEDPPAIMLLFEPKGRPEDEDNDFYIQSKQNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKISAEFGIPLYVRRVIDPANVSEVTFEEGGVSPLHLRTAAMALLRHGSRMPPNRRDELTEVVKRYYGGREISDEDLERALLVGMSPHERRRFEKKRGYSFRHSTRSSAETVLENHGHCAPKTGIEDTSNVNALDGSYATKAASNEEDRELFTVNDDVGNPSLASDIANNGSVSAILNGNVGTGNTMGFNENSASAVNADDSCLSSRPPNEVGDLCPRDEESTQAKHNSKLSLLGHGPHGKLVVEHLLKEYGEDGVRQFCQRWRQAFVEAVKPRFLPVGWDVKHSGRRDFGEFSVYNPVRKAFPAPATS 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0501 877 Gene3D - 54 163 IPR036397 GO:0003676
Sto12g0501 877 Pfam HRDC domain 324 368 IPR002121 GO:0003676
Sto12g0501 877 Gene3D - 164 292 IPR036397 GO:0003676
Sto12g0501 877 MobiDBLite consensus disorder prediction 662 696 - -
Sto12g0501 877 SUPERFAMILY Ribonuclease H-like 55 262 IPR012337 -
Sto12g0501 877 ProSiteProfiles HRDC domain profile. 319 399 IPR002121 GO:0003676
Sto12g0501 877 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 15 164 IPR045092 GO:0000175|GO:0000467
Sto12g0501 877 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 162 422 IPR045092 GO:0000175|GO:0000467
Sto12g0501 877 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 422 869 IPR045092 GO:0000175|GO:0000467
Sto12g0501 877 Pfam 3'-5' exonuclease 163 255 IPR002562 GO:0003676|GO:0006139|GO:0008408
Sto12g0501 877 SMART 35exoneu6 96 256 IPR002562 GO:0003676|GO:0006139|GO:0008408
Sto12g0501 877 Gene3D HRDC domain 310 413 IPR044876 -
Sto12g0501 877 SUPERFAMILY HRDC-like 320 404 IPR010997 GO:0000166|GO:0044237
Sto12g0501 877 PANTHER PROTEIN RRP6-LIKE 3 422 869 - -
Sto12g0501 877 PANTHER PROTEIN RRP6-LIKE 3 162 422 - -
Sto12g0501 877 PANTHER PROTEIN RRP6-LIKE 3 15 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0501 Sto-Chr12 3291895 3299035 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0501 K12951 - gmx:100791485 1211.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0501 12 3291895 3299035 Sto12g0501 12 3291895 3299035 ECH