LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto12g0498	ATGGCTAAGAGTTCATTCAAGATGGAACACCCACTTGAAAGAAGGCAGGCTGAAGCAGCTCGCATAAGAGAAAAGTATCCTGATAGAATACCAGTTATTGTTGAACGGGCTGAAAAGAGTGATGTTCCTGAAATTGATAAGAAAAAGTATCTGGTTCCTGCTGATTTGACTGTTGGACAGTTTGTGTATGTTGTGCGCAAGAGAATCAAGCTGAGTCCTGAGAAGGCTatctttatttttgtcaaaaacatTTTACCTCCAACTGAGCCATTGTCTGTATCTGATATTCGGGCTACTCCTGATGATGGCACAAAAGTACGAATATCATTCAAGGGGGTACCAGGTTCATACAGTGAGGACGCTGCACTGAAAGCCTACCCTAATTGTGAAACAGTTCCATGTGGTGATTTTGAAGATGCTTTTAAGGCCGTTGAATTATGGTTGGCCGACAAAGTTATCATTCCAATTGAAAACACTTCAGGGGGAAGCATCCATCGAAATTATGATTTACTTCTTCGCCATAGGCTTCATATTGTTGGTGAGGTGCAGTTGGCTATCAACTTCTGCCTTCTAGCTCTGCCTGGTGTCAAAGCAGAATACTTAGAACGTGTTCTAAGTCATCCCCAGgCGCTTGATCTAAGTGATACCTTCCTTACTAAATTAAGTCTTGCCAGAGTAAGTGTTGATGATGCCGCTGGTGCTGCTCAGTATGTAGCTTCAAATGGCCTGTACAATGCTGGCGTGATTGCAAGCCCTCGAGCCGCAGAAATCTATGGGCTTAATGTACTTGCAGAAAGAATCCAAGACGATTCTGAAATTATCAGTCGTTATCTAATTCTTGCAAGGGATCCAATAATTTCAAGAGCTGATAAGCCCTTCAagACAAGTATAGTGTTTACTTTGGATGAAGGTCCTGGAGTGTTGTTTAAGGCCTTGGCAGTGTTTGCATTAAGGGACATAAATTTAACAAAGATTGAAAGTCGACCACAAAGAAATCGGCCATTAAGAGTAGTTGATGACTCCAACACCGGGACTGCCAAGTACTTTGACTACCTTTTCTATATTGATTTTGAGGCTTCTATGGCTGAACCCCGGGCACAAACTGCTTTACAACATCTCCAGcCGAAGGTTAAGGTCCTGCTATCCAAGGTCTATTACCTTGTTTACTTATTCTTATGCCTTCCGTGCAACATAGAAATTATACTTCTTCTTAGAGCCTAA	1221	0.4136	MAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTEPLSVSDIRATPDDGTKVRISFKGVPGSYSEDAALKAYPNCETVPCGDFEDAFKAVELWLADKVIIPIENTSGGSIHRNYDLLLRHRLHIVGEVQLAINFCLLALPGVKAEYLERVLSHPQALDLSDTFLTKLSLARVSVDDAAGAAQYVASNGLYNAGVIASPRAAEIYGLNVLAERIQDDSEIISRYLILARDPIISRADKPFKTSIVFTLDEGPGVLFKALAVFALRDINLTKIESRPQRNRPLRVVDDSNTGTAKYFDYLFYIDFEASMAEPRAQTALQHLQPKVKVLLSKVYYLVYLFLCLPCNIEIILLLRA	406

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto12g0498	406	Pfam	Autophagy protein Atg8 ubiquitin like	14	89	IPR004241	-
	Sto12g0498	406	Gene3D	-	289	384	-	-
	Sto12g0498	406	PANTHER	PREPHENATE DEHYDRATASE P PROTEIN	82	376	-	-
	Sto12g0498	406	CDD	PBP2_Ct-PDT_like	105	284	-	-
	Sto12g0498	406	SUPERFAMILY	Periplasmic binding protein-like II	107	287	-	-
	Sto12g0498	406	Gene3D	-	1	102	-	-
	Sto12g0498	406	ProSitePatterns	Prephenate dehydratase signature 2.	322	329	IPR018528	GO:0004664\|GO:0009094
	Sto12g0498	406	Pfam	Prephenate dehydratase	108	284	IPR001086	GO:0004664\|GO:0009094
	Sto12g0498	406	SUPERFAMILY	Ubiquitin-like	3	89	IPR029071	-
	Sto12g0498	406	Gene3D	-	190	270	-	-
	Sto12g0498	406	PANTHER	AROGENATE/PREPHENATE DEHYDRATASE	82	376	-	-
	Sto12g0498	406	CDD	ACT_CM-PDT	294	380	-	-
	Sto12g0498	406	Gene3D	-	103	189	-	-
	Sto12g0498	406	ProSiteProfiles	ACT domain profile.	296	387	IPR002912	-
	Sto12g0498	406	ProSiteProfiles	Prephenate dehydratase domain profile.	107	282	IPR001086	GO:0004664\|GO:0009094
	Sto12g0498	406	SUPERFAMILY	ACT-like	278	380	IPR045865	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto12g0498	Sto-Chr12	3265362	3271020	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto12g0498	K05359		-	gmx:100792353	487.263

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto12g0498	12	3265362	3271020	Sto12g0498	12	3265362	3271020	ECH