Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0489 ATGGGGAGTAAAGAGGAAGAGTACGGTTTGCCCCTGTATGAAAAATGTTGGATTAAGCCAAGTGTTCAGAAAAAGGCGATGGACATCCTCATTCTGCTCCTACTTGTATGGGTTGTTAGTCACAGAATAACGTgcatcttctcctccaattctaGCTTCCCTTGCTTCCTGGCTCTAGTGTGCGAGTCATGGTTCACTCTCACTTGGCTTATCACCATAACCACCAGATGGACTCCTGCAACCATCAAAACCTATCCACACCGTCTCTTCCCCGAGCCTGAGCTTCCTGCAGTGGACATGTTCGTGACAACGGCGGACCCACTGGCTGAACCACCCATTCTCACAGTCAACACAGTGCTGTCTCTGTTAGCATTGGATTATCCCACTCACAAGCTAGCTTGCTACGTATCCGATGATGCTTGTTCTCCTCTTACCTTTCATGCACTCGTGCAAGCCTCCAATTTCGCTAAGCTTTGGTTACCTTTCTGTAAAAACCACAATATCACTGTTAGATCTCCTTTTAGGTATTTCTCGTCTCATCATCATACCACTACTTCCCAGTCGCCTCGCTTCAAACAAGACTGGCACACACTCAagGATGAATATGATCATCTTTGCCGTCGAATCGAAGATGGCCCCGATCTGCAGGACCAAGAATTTGCAGATTTCTCAAATACAGAGACCAGGAATCATCCACCCATAGTCAAGGTTATATGGGAGAACAGTGAAGAAGGTCGGGATGGGACGCCACATTTGATATACATTTCAAGAGATAAACGCCCAAAGCATCCACATCACTACAAAGCCGGTGCTATGAATGTTTTGGCAAGAGTGTCTGGGTTGATGACCAATGCCCCATTTACTTTGAACGTAGATTGCGACATGTTTGTGAACAATCCACAAATTGTTCAACACGCCATGTGCGTTTTGCTCGATTCCAAGGGCCAAAACGAAGTCGCATTTGTTCAGTGTCCTCAGGAATTCTTTGATGGATTAAAGGACGATCCTTTTGGAAACCAGCTCGTTGTTTTGTTCACGTACATGGGGGCGGGGCTAGCAGGATTGCAAGGACCCTTGTACGGTGGAACCAACTGCTTCCACAGAAGGAAAGTACTTTATGGTCTTTCTCCTCATGACATACAAAATGGAAACATACCAGACGAGACTATGGTTAAAAGATTTGGAGGTTCAAAGGAGCTGGTGAAATCAGCAGCTTCTGCTTTAGAAGGGAAGACATATTCCCCATGTCACAATGTTTCTAACTCTCTTGAGGCAGCCATTCAAGTTGCTTCCTGTGAATATGAATATGGCACTGCCTGGGGTGGGATGGATATATGGATCAATAACAGAGGATGTGCTTACTGGGCTGAAAATCCATACAATGGGTTGGAGATCGGAAATGTGTACCCCAGACCCAATTGCATTTACGGGATGCGCGCCAAAAGAGAGTGCGTGGGGTATTTATGGATCATTTGTTGGGGCCTTCGTTCTCTCCCCGAAATATGTTATGCTCTTCTACCTGTGTATTGCATCATTACCAACTCCACCTTCTTCCCCAagGGGGCAGGCATATGGATGCATATTGCACTTTTTGTGGTGTACAACATAAACACAATGTCGGAGTACATTTTAACAGGGCTGTCAATGAGAGCATGGTGGAATAACCAAAGAATGACAAGAATAATGGCGATGAATGCGTGGTTTTTTGCTGTTTTGAGCATCATACTTAAGGTGTTGGGAATATCGGACACAGTGTTTGACATAACAGAGAAAGACCAATTTTGGAATTGTGGTGATGACGAAGAAGCGAGCAGATTCACCTTCGACCACTCTCCAATGTTCATACCAGGCACCACTATTTTGCTTCTTCAGCTCACGGCCATGGCCAAAAAGTTGATGAATGAGGCAGAGAGTGGTGGGGTAGGCGagcttgtgtgtgtgtgttatttggTGGTGTGTTATTGGCCATTTTTGAAAGGGCTGTTTCTCAGAGCAAAATATGGAATTCCCTTATCCACTTTGTGCAAGTCAGCAGCCTTGGCCTTCCTTTTTGTGCACTTCTGCACGCACAACAACCACCAATACTAA 2088 0.4444 MGSKEEEYGLPLYEKCWIKPSVQKKAMDILILLLLVWVVSHRITCIFSSNSSFPCFLALVCESWFTLTWLITITTRWTPATIKTYPHRLFPEPELPAVDMFVTTADPLAEPPILTVNTVLSLLALDYPTHKLACYVSDDACSPLTFHALVQASNFAKLWLPFCKNHNITVRSPFRYFSSHHHTTTSQSPRFKQDWHTLKDEYDHLCRRIEDGPDLQDQEFADFSNTETRNHPPIVKVIWENSEEGRDGTPHLIYISRDKRPKHPHHYKAGAMNVLARVSGLMTNAPFTLNVDCDMFVNNPQIVQHAMCVLLDSKGQNEVAFVQCPQEFFDGLKDDPFGNQLVVLFTYMGAGLAGLQGPLYGGTNCFHRRKVLYGLSPHDIQNGNIPDETMVKRFGGSKELVKSAASALEGKTYSPCHNVSNSLEAAIQVASCEYEYGTAWGGMDIWINNRGCAYWAENPYNGLEIGNVYPRPNCIYGMRAKRECVGYLWIICWGLRSLPEICYALLPVYCIITNSTFFPKGAGIWMHIALFVVYNINTMSEYILTGLSMRAWWNNQRMTRIMAMNAWFFAVLSIILKVLGISDTVFDITEKDQFWNCGDDEEASRFTFDHSPMFIPGTTILLLQLTAMAKKLMNEAESGGVGELVCVCYLVVCYWPFLKGLFLRAKYGIPLSTLCKSAALAFLFVHFCTHNNHQY 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0489 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 215 391 IPR029044 -
Sto12g0489 695 Pfam Cellulose synthase 98 380 IPR005150 GO:0016020|GO:0016760|GO:0030244
Sto12g0489 695 Pfam Cellulose synthase 483 666 IPR005150 GO:0016020|GO:0016760|GO:0030244
Sto12g0489 695 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 9 447 - -
Sto12g0489 695 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 482 691 - -
Sto12g0489 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 115 379 IPR029044 -
Sto12g0489 695 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 9 447 - -
Sto12g0489 695 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 482 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0489 Sto-Chr12 3201248 3205008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0489 25 691 Glycosyltransferase AT2G32530 42.493 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0489 - - gmx:100780817 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0489 12 3201248 3205008 Sto12g0489 12 3201248 3205008 ECH