Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0445 ATGGCAACTGCGTCTTTACTCTCTGCAGTTGCAAGAAGGTTAGAAGGGAAGGTAGCGTTGGTCACAGGCGGCGCAAGCGGGATTGGCGAGTGCACGGCAAGGCTGTTCTCGAAGCACGGAGCTAAAGTTGTAATCGCTGATATCCAAGACGAGTTAGGCCACTCTGTGTGCCAACATCTAACAAATTCTTCATCCTCCTCCTGCTACGTCCACTGCGACATCACAAACGAAAACCACATGCAAAACGCAGTGAACACAGCAGTTTCCAAGTACGGGAAGCTGGATATCATGCTGAACAACGCCGGAATAATGGGCGCGTGGGCACCCAGCATAGTGGACAACGAAAAGAGCGCGTTCGAGCAGGTCATCAGCGTTAACTTGGTGGGAACCTTTGTGGGAACGAAACAGGCAGCGAAGGTGATGATCCCCACGCGCAGTGGCACCATAATTTCAATAGCTAGCGTGTGCGGAAATATTGGGGGCATGGCGTCACACGCTTACACGTGCTCCAAGCATGGGGTGATTGGGCTAATGAGAAACGCCGCCGTGGAGCTTGGAACATATGGGATCCGCGTCAACTGTGTGTCTCCCTATGCAACTCCCACGCCCATGAGTAGGACTTTTCTTAATCTCGATGATGAGGAGGAGATTTCCTCAACCCTTTATTCTAATCTCAAAGGAACTCTTCTTCAGCCTCAAGATATAGCTCACGCTGCTCTTTATTTGGCAAGTGATGATTCCAAGTATGTTAGTGGACTTAATCTTGTGGTAGATGGTGGGTTCTCTATTCACAATTCTGGCTTTTGTCCACTTCATcaatcttattaa 828 0.4903 MATASLLSAVARRLEGKVALVTGGASGIGECTARLFSKHGAKVVIADIQDELGHSVCQHLTNSSSSSCYVHCDITNENHMQNAVNTAVSKYGKLDIMLNNAGIMGAWAPSIVDNEKSAFEQVISVNLVGTFVGTKQAAKVMIPTRSGTIISIASVCGNIGGMASHAYTCSKHGVIGLMRNAAVELGTYGIRVNCVSPYATPTPMSRTFLNLDDEEEISSTLYSNLKGTLLQPQDIAHAALYLASDDSKYVSGLNLVVDGGFSIHNSGFCPLHQSY 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0445 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 IPR002347 -
Sto12g0445 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Sto12g0445 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
Sto12g0445 275 PANTHER MOMILACTONE A SYNTHASE 7 268 - -
Sto12g0445 275 Pfam Enoyl-(Acyl carrier protein) reductase 23 262 - -
Sto12g0445 275 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 154 182 IPR020904 GO:0016491
Sto12g0445 275 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 7 268 - -
Sto12g0445 275 CDD secoisolariciresinol-DH_like_SDR_c 13 262 IPR045309 GO:0016616
Sto12g0445 275 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Sto12g0445 275 PRINTS Glucose/ribitol dehydrogenase family signature 92 103 IPR002347 -
Sto12g0445 275 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Sto12g0445 275 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Sto12g0445 275 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Sto12g0445 275 PRINTS Glucose/ribitol dehydrogenase family signature 225 245 IPR002347 -
Sto12g0445 275 Gene3D - 5 270 - -
Sto12g0445 275 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 263 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0445 Sto-Chr12 2829937 2830848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0445 10 263 Acyl Lipid Metabolism Gene Families AT1G24360 29.297 5.51e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0445 - - gmx:100810754 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0445 12 2829937 2830848 Sto12g0445 12 2829937 2830848 ECH