Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0431 ATGGCGATTCTTTACGCTCTGGTGGCGAGAGGTACGGTGGTGCTGGCGGAGTTTAGCGCCGTCACCGGCAATACGGGCGCTGtggctcgccggattctggaaaagcTGCCCGATGAAGCTGAATCCAGGCTTTGCTTCTCTCAGGATCGTTACATCTTTCACATACTCCGATCCGATGGCCTCACCTTCCTCTGCATGGCCAACGACACTTTTGGAAGGAGAATTCCTTTTGCTTACTTGGAAGATATTCAGATGAGATTTATGAAGAACTACAGCAGAGTGGCCCATTATGCACCTGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTTGCATCAGCAAAtggaatttttttcaagttcttCTAGTGCAGATACTCTCAACCGTGTGAGGAGTGAAGTTGGTGAGGCAAGTATTATACGCACAATCATGGTAGAAAACATTGAGAAAATATTGGAGAGAGGTGACCGAATTGAGCTTCTTGTTGATAAGACCGCAACAATGCAAGACAGTGCATTTCACTTTAGGAAACAGTCCAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAATGCCAAACTCTTGGCACTATTGACATTCTTGATTGTTCTGTTTCTTTACTTCATAATTGCTGCTTGTTGTGGAGGCATCACTTTACCATCCTGCAGATCCTGA 672 0.4241 MAILYALVARGTVVLAEFSAVTGNTGAVARRILEKLPDEAESRLCFSQDRYIFHILRSDGLTFLCMANDTFGRRIPFAYLEDIQMRFMKNYSRVAHYAPAYAMNDEFSRVLHQQMEFFSSSSSADTLNRVRSEVGEASIIRTIMVENIEKILERGDRIELLVDKTATMQDSAFHFRKQSKRLRRALWMKNAKLLALLTFLIVLFLYFIIAACCGGITLPSCRS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0431 223 SUPERFAMILY SNARE fusion complex 122 190 - -
Sto12g0431 223 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 129 189 IPR042855 -
Sto12g0431 223 PRINTS Synaptobrevin signature 134 153 IPR001388 GO:0016021|GO:0016192
Sto12g0431 223 PRINTS Synaptobrevin signature 154 173 IPR001388 GO:0016021|GO:0016192
Sto12g0431 223 PRINTS Synaptobrevin signature 190 209 IPR001388 GO:0016021|GO:0016192
Sto12g0431 223 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Sto12g0431 223 PANTHER LONGIN-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 222 - -
Sto12g0431 223 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Sto12g0431 223 Pfam Synaptobrevin 125 214 IPR042855 -
Sto12g0431 223 SUPERFAMILY SNARE-like 3 118 IPR011012 -
Sto12g0431 223 SMART Longin_2 28 110 IPR010908 -
Sto12g0431 223 CDD Longin 4 118 IPR010908 -
Sto12g0431 223 PANTHER SNARE PROTEINS 1 222 - -
Sto12g0431 223 Gene3D - 124 212 - -
Sto12g0431 223 Gene3D Longin domain 1 123 - -
Sto12g0431 223 CDD R-SNARE 125 187 - -
Sto12g0431 223 ProSitePatterns Synaptobrevin signature. 147 166 IPR001388 GO:0016021|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0431 Sto-Chr12 2748937 2752318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0431 1 223 Miscellaneous Gene Families AT5G22360 84.375 2.12e-140 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0431 K08515 - tcc:18590280 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0431 12 2748937 2752318 Sto12g0431 12 2748937 2752318 ECH