Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0402 ATGGAGTTAGGAAGTGTACTCCACTTTCTCCAGGATAAGACTATTTTAGTCACTGGTGCCACTGGTTTTCTTGCCAAAATTCTGGTGGAGAAGATATTGAGAGTTCAACCAAATGTGAAgaaactttttcttcttttaagagCAGCAGACACCAAATCTGCCACCCATCGGTTGCATAATGAGaTTATCGGGAAGGACTTGTTTAGATTGCTGAAGGAGAAATTGGGTGGAAATTTTAATTCCTTTATTTCGGAAAAGTCGACTCTTGTTCCTGGGGACATATCTCAAGAGGGCCTGGGCTTGAAGGATTCCATCTTAAGGGAGGAGATTTGTAATCAAACAGATGTTATTATTAACTTAGCCGCAACTACTAATTTTGATGAAAGATATGATGTTGCTTTAGGACTAAACACCTTTGGAGTAAAACATGTCATAAACTTCGCCAAACAATGTGTTAAACTCAAGGTGCTTGTCCACGTATCAACAGCTTATGTGTCTGGTGAGAGAGGAGGACTGATCTTAGAGACCCCATATCATTTGGGAGATTCGCTTAATGAAGTGGCTGGACTAGACATGGAAGCAGAAAACAGAATCATACATAACAGATTGAATGAACTAAGAGAGGAGGGAGCCACAGCAGATGAAGTCAAAATGGCCATGAAGGACTTAGGTATTAACAGGGCAAAGGTGTATGGATGGCCAAACACATACGTATTTACAAAGGCAATGGGAGAAATGATTTTGGAAGATCTAAAAGGAAACTTGCCTGTTGTTATTGTTCGTCCCACCATAGTTACCAGTACATACAAAGAACCTTTCCCTGGTTGGGCAGAAGGTGTAAGaACCATTGACAGTTTAGCCGTTGCTTATGGGAAAGGAAAACTAACATGCTTTCTTGGAGATCTGAAGTCACTTGTGGATGTGCAGATACCAGCTGATATGGTGGTAAATGCAATGCTAGTGGCGATGGTGGGTCATGCAAAAGAGGGTAATGactatagcatatatcatgtggGTTCGTCGGTTAGGAACCCATTGAGATACGAAAATCTGCAAGAGTACGGGTTCAAATACTTCACGGCAAAACCATGGATAAACAAAGACGGAAAGCCCATCAAGGTTGGGAAATGTAGAGTGTTGAACAACATGGACAGCTTCCGCAGATACATGTTCATCCGCTATCTCCTTCTCTTAAAGGGACTAGAGCTTGCCAATACAGCCTTTTGCCAGTACTTCCAAGAAACATATCTTGAGCTCAACAGAAAAATTCAGATTGTGATGCGGTTGGTGGACATTTACAGGCCTTACTTATTCTTCTCTGGCGCATTTGATGATATGAACACAGAGAAGTTGAGAATGGCAGCAAGAGAAGGTGGGGTAGAGACAGATTTGTTTTACTTTGACCCCAAAGACATCGATTGGGAGCATTATTTTATGAACATTCATATCCCTGGTATCGTCAAGTACATCTTCAAGTGA 1479 0.405 MELGSVLHFLQDKTILVTGATGFLAKILVEKILRVQPNVKKLFLLLRAADTKSATHRLHNEIIGKDLFRLLKEKLGGNFNSFISEKSTLVPGDISQEGLGLKDSILREEICNQTDVIINLAATTNFDERYDVALGLNTFGVKHVINFAKQCVKLKVLVHVSTAYVSGERGGLILETPYHLGDSLNEVAGLDMEAENRIIHNRLNELREEGATADEVKMAMKDLGINRAKVYGWPNTYVFTKAMGEMILEDLKGNLPVVIVRPTIVTSTYKEPFPGWAEGVRTIDSLAVAYGKGKLTCFLGDLKSLVDVQIPADMVVNAMLVAMVGHAKEGNDYSIYHVGSSVRNPLRYENLQEYGFKYFTAKPWINKDGKPIKVGKCRVLNNMDSFRRYMFIRYLLLLKGLELANTAFCQYFQETYLELNRKIQIVMRLVDIYRPYLFFSGAFDDMNTEKLRMAAREGGVETDLFYFDPKDIDWEHYFMNIHIPGIVKYIFK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0402 492 CDD FAR_C 416 491 IPR033640 -
Sto12g0402 492 PANTHER FATTY ACYL-COA REDUCTASE 2 491 - -
Sto12g0402 492 Pfam Male sterility protein 17 319 IPR013120 -
Sto12g0402 492 Pfam Male sterility protein 394 492 IPR033640 -
Sto12g0402 492 Gene3D - 8 374 - -
Sto12g0402 492 PANTHER MALE STERILITY PROTEIN 2-RELATED 2 491 IPR026055 GO:0080019
Sto12g0402 492 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 335 IPR036291 -
Sto12g0402 492 CDD FAR-N_SDR_e 13 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0402 Sto-Chr12 2557204 2561813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0402 110 491 Acyl Lipid Metabolism Gene Families AT4G33790 57.592 2.25e-171 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0402 K13356 - gmx:100798338 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0795 7 5900972 5905975 Sto12g0402 12 2557204 2561813 CCT
Sto12g0402 12 2557204 2561813 Sto12g0402 12 2557204 2561813 ECH