Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0386 ATGCACGCTCTTTCTCCATACCCTTCCAATTCTTCATTCAACTATCTCTTCCACACACGCCCTTCCACCAATCGCTTTACTCCCAACCGATTTCTTATCAAATGCGCTTACGGCTTCGAATCTGCCGGCTTCGCTTCCACCCGAGCCGATTGGCAGACCTCCTGCGCCATCTTATCCAGTAAGGTTGTCTCTCAGGACCAACCCTCCTCTGACAATAACGGCGCCACCGCCGACCATGTCGCCGCCGTTAATGGCCACAACGCCGCCGTCTCCGATCTCAACCTTGTCCACATCGGTAATTCGGGAGGTACCGACAATAACAAGCCGCTTCCCCCTAAGCCGCTTACTATTTCTGACCTCTCTCCAGCTCCAATGCACGGCTCCCAGCTGCGCGTCGCGTACCAGGGCGTTCCTGGAGCGTACTCGGAGGCGGCTGCCGGTAAGGCGTATCCGAACTGCGAAGCTATTCCTTGCGATCAATTTGAGGTGGCTTTCCAGGCTGTGCAGCTCTGGATCGCCGATCGAGCTGTTCTTCCCGTGGAAAACTCTCTCGGCGGCTCGATCCACCGGAATTACGACCTCCTCCTTCGCCACCAGCTCCACATCGTCGGAGAGGTTCAACTCCCGGTACACCACTGCCTCCTCGCGCTCCCCGGAGTTCGGAAAGAGTTCCTAAGCCGTGTAATCTCGCATCCGCAAGCACTCGCGCAGTGCGAGCACACGCTAACCAAATTAGGCCTCAACGTCGCACGCGAGGCCGTGGACGACACCGCCGGCGCAGCGGAATTCGTCGCCGCCAACAACCTCCGCGATACGGCGGCCATCGCGAGCGCACGCGCGGCGGAGCTGTACGGACTACAGATATTAGCAGATGGGATCCAGGACGACCCGAGCAACGTGACCCGATTCGTGATGCTGGCCCGGGAACCCATAATCCCGCGCACGGACAGGCCGTTCAAGACGAGCATAGTGTTTGCGCACGACAAGGGGACGTCGGTGCTGTTCAAGGTGTTATCGGCGTTCGCTTTCAGAAACATCAGCTTGACGAAGATCGAATCAAGACCTCACCGGAGCCGTCCGATTAGAGTGGTGGACGACGAGAATGTGGGGACAGCGAAGCACTTCGAATATATGTTCTACGTtgattttgaagcttcaatGGCGGAAGTTAGGGCACAGAATGCTCTTGCAGAGGTTCAGGAGTTCACCTCTTTCTTGAGGGTAGGATATGGCATTATGCCTAATGGGGGTTGTTGGTTGGATTAA 1266 0.5624 MHALSPYPSNSSFNYLFHTRPSTNRFTPNRFLIKCAYGFESAGFASTRADWQTSCAILSSKVVSQDQPSSDNNGATADHVAAVNGHNAAVSDLNLVHIGNSGGTDNNKPLPPKPLTISDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVQLWIADRAVLPVENSLGGSIHRNYDLLLRHQLHIVGEVQLPVHHCLLALPGVRKEFLSRVISHPQALAQCEHTLTKLGLNVAREAVDDTAGAAEFVAANNLRDTAAIASARAAELYGLQILADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRSRPIRVVDDENVGTAKHFEYMFYVDFEASMAEVRAQNALAEVQEFTSFLRVGYGIMPNGGCWLD 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0386 421 Gene3D - 215 296 - -
Sto12g0386 421 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 16 408 - -
Sto12g0386 421 SUPERFAMILY ACT-like 303 408 IPR045865 -
Sto12g0386 421 Gene3D - 126 214 - -
Sto12g0386 421 SUPERFAMILY Periplasmic binding protein-like II 131 314 - -
Sto12g0386 421 Gene3D - 315 411 - -
Sto12g0386 421 ProSiteProfiles Prephenate dehydratase domain profile. 131 308 IPR001086 GO:0004664|GO:0009094
Sto12g0386 421 CDD ACT_CM-PDT 320 408 - -
Sto12g0386 421 ProSiteProfiles ACT domain profile. 322 413 IPR002912 -
Sto12g0386 421 PANTHER AROGENATE DEHYDRATASE 16 408 - -
Sto12g0386 421 ProSitePatterns Prephenate dehydratase signature 1. 284 306 IPR018528 GO:0004664|GO:0009094
Sto12g0386 421 ProSitePatterns Prephenate dehydratase signature 2. 348 355 IPR018528 GO:0004664|GO:0009094
Sto12g0386 421 CDD PBP2_Ct-PDT_like 131 310 - -
Sto12g0386 421 Pfam Prephenate dehydratase 132 310 IPR001086 GO:0004664|GO:0009094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0386 Sto-Chr12 2450765 2452271 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0386 K05359 - gmx:100781285 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0386 12 2450765 2452271 Sto12g0386 12 2450765 2452271 ECH