Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0270 atGATGACCAATCAGTGTCTCTTCTCCTTCTCACTAGCACTATTAGTTCTCTTTTTCTATTCCACCATCACCACCACTGTAGCCCAATCCCCGGCGGTGGCCCCAGTAAAAGCCGCCCCTGTTCCGGCCGCCGCCACCCCTGCAGCTTTAGTCCCCACATTACCACAGTCACCCTCCGACAACACCCCCGACACCGCCGCCACTGACATAATCGGAATTCTGAGAAAGGCCAAATCATACAGCGTCTTCATTCGGCTCCTCAAAATCACCCAATTGATCAACCAAATCAATTCGCAGCTCATAACCACCAAATCAGGAGGCTTAACCATTCTGGCACCAGATGACTCTGCCTTCTCAGAGCTAAAAGCAGGATTCCTCAACTCTCTCACCGATGCCCAAAAGCTCGAGCTTTTGCAGTTCCACATTCTCCCCAACTATGTGTCAAGCAACAATTTTGACACTCTCACGAACCCGGTTCGAACCCTGGCTGGAGATAAACCGGGGAGGGTGGATCTAAACGTGACGAGTTATGGTGGGAGTGTGAACATTTCAACAGGGGTAGTGAATACGACGGTAAATGGGATTGTGTATACGGATAAGCGTCTTGCTATTTATAAGTTGGATAAGGTTCTTCTTCCTCTCGACTTCTATGCTACCAATACTCCCGCAGCTGCACCGGCGCTGGCTCCGGCGACGGCGGTGGCGAAAGCGCCTAAAGCTGATAAGGATGATTCATCATCCTCCGATGATTCTTCGGATTCATCGCAGGGTGTGGGCACTAAAGAGGAATCTGGTGATGTGAGAATGAAGGGATGTGGAATGTGGGTGTCTCTTGGAGTTGCTTTGGTAGCAACAATGACAGGGAACTCTAGCAGGGCCGCGTGCGGAGGTGTGGTGAGGGACGGTGTTGGGAATGCAATATTCTCCTTCAGTCGTAATCTCGGGTGTTGTACTATCACTTGGGCTGAGTTGCATGGCATCATGGATGGGCTGGAGTTACTCTGGTCTCGGGGTGTTCGTACTGTTGAGATTGAGACCGACTCCGCTACTGCGACGACGCTTATTTATGATAATTCGAATGGCTCGCATCCTTGCACCCAGCTTATTAATCGCATCAAGCTTCTTTTGTCGCGTCCTTGGAACGTGTCGATCAAGCACGTGTACAGAGAATGCAACAAAGTTGCTAATTTCATGGCCAAGTTTGGTCAAGAGCTTTCTCATGGTCTCCATGTTTTTGAGCATGTTCCTGAAGGGTGCTTAGACTTGCTTGAGCAAGATGGAATTAAAGTTGTGGCCTGGGGGTGTGATAGTAGTAGTATGCATGGTATAGCAGCTCCGGCCCCAGGGTTCAGCACGGTTCCCCTGGTGCCAGTGACACCAAGTGGCGCCCCTACACCCACGGCGGCAGCCATAGTCCCCAAAGGCCCCATCATTGACATTATCCAAATCCTTCGCAAGGCCAAGAAATTCAGCGTCCTCATCCGCCTCCTCAAGACCACCCAATTGATCAACCAGCTCAACTCCCAACTCGCCACGTCCGGGTCGGGCGGTTTGACCATTTTCGCCCCGGACGACGCGGGCTTCTCCAAACTAAAAGCAGGGTTTCTGAACTCCCTGAGTGACAGGCAGAAGGTGGAACTCCTACAGTTCCACACCATCTCTACCTACATCTCTATCTCCAACTTTGATACTCTCACGAACCCGGTTCAGACCCAGGCCGGGGATGACCCCAAGAGGCTTCAACTCAACGTCACCACCTACGGAGGCAGCCAGGTCAGCATGACCACCGGCGCCGTCAACGCCTCCGTGACGGGCACTGTGTATACGGACAACAAGCTTGCCATATATCAAGTTGACAAGGTGCTTCTTCCACTTGACTTCGTGCTCCCCAAGGCTTCGGCTCCGGCGCCGGCTCTGGCGGCGGCTAAGGGAGATTCGGCTAAGGGTGATAAAAGCAAATCAGGGGCGGGAGGGAATGGAAGTGGGAGTGGGGATGATAGTAATAGTAGTGGAAGTGCGGATGATAGTGCGCTTCCTGTGGACACTTCCATGAGTATTAAGGTGGAGCCTATTACATGGAtgcctctccttcttcttggattTGCTTACGTGGCCGGACACCTCATATGA 2130 0.516 MMTNQCLFSFSLALLVLFFYSTITTTVAQSPAVAPVKAAPVPAAATPAALVPTLPQSPSDNTPDTAATDIIGILRKAKSYSVFIRLLKITQLINQINSQLITTKSGGLTILAPDDSAFSELKAGFLNSLTDAQKLELLQFHILPNYVSSNNFDTLTNPVRTLAGDKPGRVDLNVTSYGGSVNISTGVVNTTVNGIVYTDKRLAIYKLDKVLLPLDFYATNTPAAAPALAPATAVAKAPKADKDDSSSSDDSSDSSQGVGTKEESGDVRMKGCGMWVSLGVALVATMTGNSSRAACGGVVRDGVGNAIFSFSRNLGCCTITWAELHGIMDGLELLWSRGVRTVEIETDSATATTLIYDNSNGSHPCTQLINRIKLLLSRPWNVSIKHVYRECNKVANFMAKFGQELSHGLHVFEHVPEGCLDLLEQDGIKVVAWGCDSSSMHGIAAPAPGFSTVPLVPVTPSGAPTPTAAAIVPKGPIIDIIQILRKAKKFSVLIRLLKTTQLINQLNSQLATSGSGGLTIFAPDDAGFSKLKAGFLNSLSDRQKVELLQFHTISTYISISNFDTLTNPVQTQAGDDPKRLQLNVTTYGGSQVSMTTGAVNASVTGTVYTDNKLAIYQVDKVLLPLDFVLPKASAPAPALAAAKGDSAKGDKSKSGAGGNGSGSGDDSNSSGSADDSALPVDTSMSIKVEPITWMPLLLLGFAYVAGHLI 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0270 709 Gene3D - 284 404 IPR036397 GO:0003676
Sto12g0270 709 Gene3D FAS1 domain 48 213 IPR036378 -
Sto12g0270 709 ProSiteProfiles FAS1/BIgH3 domain profile. 477 622 IPR000782 -
Sto12g0270 709 PANTHER FASCICLIN DOMAIN PROTEIN 459 691 - -
Sto12g0270 709 PANTHER FASCICLIN DOMAIN PROTEIN 42 284 - -
Sto12g0270 709 MobiDBLite consensus disorder prediction 236 266 - -
Sto12g0270 709 Pfam Reverse transcriptase-like 285 401 IPR002156 GO:0003676|GO:0004523
Sto12g0270 709 ProSiteProfiles FAS1/BIgH3 domain profile. 67 211 IPR000782 -
Sto12g0270 709 Gene3D FAS1 domain 477 624 IPR036378 -
Sto12g0270 709 Pfam Fasciclin domain 79 213 IPR000782 -
Sto12g0270 709 Pfam Fasciclin domain 489 624 IPR000782 -
Sto12g0270 709 SUPERFAMILY FAS1 domain 60 214 IPR036378 -
Sto12g0270 709 CDD RNase_H_like 287 400 IPR044730 -
Sto12g0270 709 MobiDBLite consensus disorder prediction 656 676 - -
Sto12g0270 709 SMART fasc_3 109 214 IPR000782 -
Sto12g0270 709 SMART fasc_3 519 625 IPR000782 -
Sto12g0270 709 MobiDBLite consensus disorder prediction 642 676 - -
Sto12g0270 709 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 42 284 IPR045003 -
Sto12g0270 709 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 459 691 IPR045003 -
Sto12g0270 709 SUPERFAMILY FAS1 domain 473 625 IPR036378 -
Sto12g0270 709 SUPERFAMILY Ribonuclease H-like 287 405 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0270 Sto-Chr12 1648795 1653496 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0270 - - gmx:100801554 309.686