Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0265 ATGTATTCTTTTGGTAGAAATTGCTTGAAATATGGTAGCTGCGTGAGGCGGGATTGCTTGGATAATCTATTCTTTGCAAATTCCTTTTGGCAGCAATTTCATGAATCACCCATTGAACAAAAATCTAGGAGGATTAATACCCCTCATCATACTGACCCCTTTTTCCAAATCGCTTCTAATAAAATTTCAGGCTTGTCTGCACGCATTTGCTTTGCTTCTCATTTTTCAACCAAGCCACCTTCCAGATCATTTCGAAGAAGAGTACGTAACAGATTGTTAAAATCCTTGAAGCCTACTCTAGACCAAGCCCAATTTCAATCGGCCTTGTCCCAACTTCCCCCAAGGTTCACTCCTGAAGAACTCTGTAATATTATTACTTTTCAAGAAGACCCATTAGTCTGTTTAGAGCTATTTAATTGGGCATCTCAACAACCTAGGTTTCGGCACAATGTATCCACTTATCATATAACCATACAGAAGCTTGGTGCTGCAAGAATGTACCAAGAAATGGATGACGTTGTCAATCAGGTGCTTGCAGTTCCATTAAATGGTTCGGAGGCACTTTACAATACTATCATATATTATTTCACTGAGGCTCGAAAGTTGACTAGAGCTGTCAATATATTTAACCACATGAAAAGTGGTAGAAATTTCAATTGCAAGCCTTCTATCAGAACCTATAATCTTCTGTTTGCTGCACTGTTGAGTAGAGGAAGCAactcttatattaattatgtgtatatggACACTACTAGATGTCTGTTTAAGCAAATGGTCAATGATGGGATAGAGCCTGATATATTTACTTTGAATTCTATGATTAAAGGTTATGTGCTTTCTCTTCATGTTAATGATGCACTGAGGATATTCCATCAGATGGGCGTGGTTTATGATTGCCAGCCTAACTCATTTACCTATGATTATTTGATACATGGGTTGTGTGTCCAAGGAAGAACAAAGAATGCTATAGAGTTATGTACTGAAATGAAGACCAAAGGCTTCACCCCAAGTAGTAAATCTTATAATTCGCTTGTTAATGCTTTGGCACTTGGTGGAGAGGTTGAGGAGGCGTTAAAATATCTGTGGGAGATGACTGAAAAGCAGAGGTCAGCTGATTTTATTACATATAGGACTGTACTGGATGAGATATGTAGACAGGGAAGAGTTAAGGAGGCTATGAGGTTATTGCAGGAGTGGCAAGAAAGGGCCCTAGTGGATGAACATGCTTATAAAAAGCTTCTTTATGTGCTTCAAGATGACTATGGGAATTCAATTAGCAGAATTGATCCAGTTGTTGATGTTATGTGGCATTAG 1314 0.3805 MYSFGRNCLKYGSCVRRDCLDNLFFANSFWQQFHESPIEQKSRRINTPHHTDPFFQIASNKISGLSARICFASHFSTKPPSRSFRRRVRNRLLKSLKPTLDQAQFQSALSQLPPRFTPEELCNIITFQEDPLVCLELFNWASQQPRFRHNVSTYHITIQKLGAARMYQEMDDVVNQVLAVPLNGSEALYNTIIYYFTEARKLTRAVNIFNHMKSGRNFNCKPSIRTYNLLFAALLSRGSNSYINYVYMDTTRCLFKQMVNDGIEPDIFTLNSMIKGYVLSLHVNDALRIFHQMGVVYDCQPNSFTYDYLIHGLCVQGRTKNAIELCTEMKTKGFTPSSKSYNSLVNALALGGEVEEALKYLWEMTEKQRSADFITYRTVLDEICRQGRVKEAMRLLQEWQERALVDEHAYKKLLYVLQDDYGNSISRIDPVVDVMWH 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0265 437 Pfam PPR repeat family 188 234 IPR002885 -
Sto12g0265 437 Pfam PPR repeat family 301 349 IPR002885 -
Sto12g0265 437 Pfam PPR repeat 268 293 IPR002885 -
Sto12g0265 437 Gene3D Tetratricopeptide repeat domain 77 243 IPR011990 GO:0005515
Sto12g0265 437 Gene3D Tetratricopeptide repeat domain 244 429 IPR011990 GO:0005515
Sto12g0265 437 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 41 427 - -
Sto12g0265 437 Pfam PPR repeat 371 399 IPR002885 -
Sto12g0265 437 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Sto12g0265 437 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Sto12g0265 437 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Sto12g0265 437 PANTHER ATPASE EXPRESSION PROTEIN 3 41 427 - -
Sto12g0265 437 TIGRFAM PPR: pentatricopeptide repeat domain 374 402 IPR002885 -
Sto12g0265 437 TIGRFAM PPR: pentatricopeptide repeat domain 340 366 IPR002885 -
Sto12g0265 437 TIGRFAM PPR: pentatricopeptide repeat domain 304 337 IPR002885 -
Sto12g0265 437 TIGRFAM PPR: pentatricopeptide repeat domain 268 302 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0265 Sto-Chr12 1616858 1618249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0265 150 433 Glycosyltransferase AT1G05670 21.831 3.98e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0265 - - gmx:102666460 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0265 12 1616858 1618249 Sto12g0265 12 1616858 1618249 ECH