Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0238 ATGTATAGAGCGCGAGCTGAAGGCATAACTTTCACGAAGGAACCCTACATCGAGGACGTAGGGCCGCGTAGAATAAAGAGTATGAAATTCACTGCGTTATCAGACTCAGAGATCAGCAAAATTGCCGAAGTTCAAGTGTGGAAAAATTCCTATTATGATCAAACTAGAAAGCCAATCGAGGGTGGCTTGTTGGATCCCCGCATGGGCCTTGCCAATGCTAGCGACAAGAGTGGCACCTGTGCAACATGCCATGCGAAATATGATAGCTGTCCAGGGCACTACGGGTACTTAGAACTTGCTCTTCCTGTTTACCATGTTGGATACTTAGGTGTCGTTTTGCAAATATTGAAGTGCATTTGCAAGGGTTGTGCTCGTACACTCATTGATGAAGATTTGCGTAAAGAACGGTTGAAGAAGATGAGAAGTCCCAAATTAGAGCATCCGAGGAAGATTGCATTAGCAAAGACTCTTATAGATAGATGTAGTGCCATGACAAGTAGCAAAGCTGTGAAGTGTCTGAGATGTGGATTTATCAATGGTCGGGTCCACTCCTTTTCATGTGCTATTACCATTGGAATTGATTTGaagAGCAATGACTATGTTTGGTCTGATGCAGTTAAGCAGAATAGCTTCTTAACTGAGCATCACTGTCCTGTAAAGAAGGCTGTATCAATGCTAGGTATTATTCACGATACTTCAAAGTGTATTGATGGAAATCTAGAAGAGTTTCGATCAGCAATTTCTCATACAAAAGAGGCTAAGGCACCTGTCAACTTGACTACACACCTTCTTGACCCTCTTAGAGTTCTTTTCCTCTTTAAAAGAATGCCTGATGAGGACTGTGAATTACTTTATCTTGCAGACAGACCAGAGAAATTCATTTTAACAAACATTGCTGTGCCACCTATAGCTATTCGACCTTCAGCTATGGTGGGTGGGTCACATAGcaatgaaaatgaaataacaGAGAGGCTAAAGCAAATCATTCAAGCCAATGCTAACCTCCGCCAAGAGTTACAGGAAGCAAGTGGGGCATTCAAATGTCTGGTATAG 1053 0.4179 MYRARAEGITFTKEPYIEDVGPRRIKSMKFTALSDSEISKIAEVQVWKNSYYDQTRKPIEGGLLDPRMGLANASDKSGTCATCHAKYDSCPGHYGYLELALPVYHVGYLGVVLQILKCICKGCARTLIDEDLRKERLKKMRSPKLEHPRKIALAKTLIDRCSAMTSSKAVKCLRCGFINGRVHSFSCAITIGIDLKSNDYVWSDAVKQNSFLTEHHCPVKKAVSMLGIIHDTSKCIDGNLEEFRSAISHTKEAKAPVNLTTHLLDPLRVLFLFKRMPDEDCELLYLADRPEKFILTNIAVPPIAIRPSAMVGGSHSNENEITERLKQIIQANANLRQELQEASGAFKCLV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0238 350 Pfam RNA polymerase Rpb1, domain 1 23 341 IPR007080 GO:0003677|GO:0003899|GO:0006351
Sto12g0238 350 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 10 180 - -
Sto12g0238 350 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 224 342 - -
Sto12g0238 350 Coils Coil 318 345 - -
Sto12g0238 350 PANTHER DNA-DIRECTED RNA POLYMERASE 10 180 IPR045867 GO:0003899|GO:0006351
Sto12g0238 350 PANTHER DNA-DIRECTED RNA POLYMERASE 224 342 IPR045867 GO:0003899|GO:0006351
Sto12g0238 350 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 24 341 - -
Sto12g0238 350 Gene3D RNA polymerase II, clamp domain 15 142 IPR044893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0238 Sto-Chr12 1421159 1424154 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0238 K03018 - jre:108979063 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0238 12 1421159 1424154 Sto12g0238 12 1421159 1424154 ECH