LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto12g0228	ATGGACGACGAACTACTTGAGTTACAGAAGCAATTCGAATTCGCACAGCAAGCGAAATCGAGCATTCGATTATCGGAGCGAAATGTTGTTGAATTGGTTCAGAAACTACAGGAGCTCCATATAATCGATTTCGACCTTCTTCACACTGTCTCTGGCAAAGAATACATCACTCCCGAGCAACTGAGGAATGAGATGGTGGCTGAAGTTAACAAGTTAGGGCGTGTTTCTCTGATTGATCTCGCTGATGCTACTGGAGTTGATTTGTATCATGTTGAGAAGCAGGCTCAGCAAGTTATAACAGATCATCCAGAGATGATGTTAATTCAAGGGGAAATTATGTCAGAATCTTACTGGGACTCGGTAGCTGAAGAAACTAATGAGAGGCTTCAGGAATGTAGTCAGATTGCACTCACAGAACTTGCTGCACAATTAAATGTTGGTCTAGAATTGGTTGCCTCCATGTTGGAGCCTCGCCTAGGCACCGTGGTGAAGGGGAGGCTTGAAGGTGGTCAGTTGTATACCCCTGCATATGTAGCTCGTGTTAGTGCCATGGTTCGAGGTGCTGCTAGGGGTATCACAGTTCCAACAAATTTGTCAGCGTTATGGAGCTTGTTACAGCAATTACTGCAAGAAATGGATGGAACCAGTGGTGTGGCTGTTGATGGATCCTTCTTCCATTCTTTGTTTAATGGGCTTGTGAAGGAATGCGAGGTTCTAGGATCACTTCGTGCTGGAATACATTGGACCCCAGCTGTCTTTGCCGTTGCTCAAAAGGAATCTGTGGACTCATTCTTTTCACAGAATTCTTTTGTTAGCTATGACGTTCTGCACAAACTTGGAATTCCCCAGCCCATTCAATTCTTGCAGTCCAGATATCCTGAAGGTATACCTCTAGTTACAACATTTGTTCACCCATCAATGATCGAAATGCTGGATGCTGCTATTGAGGATGCTCTTGAGCGTGGTAGCTGGAGTGATTCTCTCTCCTTACTGCCCCCGTCCTTCACTCCTCAAGATGCATCTAAAATGTTGTCCCTCTGCCAATCTGTTCAATCAGCCCTTAAGTCTAACAGAGCACAAATTTTTGGggatttttatgtattgagcaACAGCTTTATGAAGGACATTTGTGAGCACCTGGTAAAAGAGATGGAAACATTAGGTGTTTCAGGTTCTTCTGGCAGTAAGATGTCTGGTGATTCTCAAGTAGCCAATGAAGCAAAAGTTGGGCAAGATTTAAGCAGGCCAAATGAGTCAAGTGAAACAGCAATTGAGGGTGGAGCCATTAAACATGCTGATAGAGggtcaaagaagaaaaagggaaagTCCACTGTTAATGCAGGTGCAAATGTATCTGAAAGTGCTTCAGATATCCAGGAACAGACTTCCACAAAATCTAAAAGAAACCAGAGGAGGAGCAAGGATACATCTTCCTCACAAATGTCAGATTTGAAAGGTTCTAGAAAAGAATCAATTAAACGGAAAGAGGATAATCTCAGCAGTCCTTCAGAAGATTGGATCATGCAGAAGATTATAACTTTGGTCCCTGATTTTGAAGAACAATGTATGGATGATCCTGAAACAATTCTGAGGCCTTTGGCCAACCATTTGAGGCCTACTATAATAGCTTCttggatggagaagaagaaggcatTGTTTACAGAAAATGCAGAAAGAATGAAATGTTTGATTGATAATTTGCAAAAGAAACTTGACGAGTGTTTCTTAAACATGCAGCTGTATGAAAAAGCTTTAGAATTGTTTGAAGATGATCAATCAACCTCCGTTGTTTTGCGTAGGCATTTACTGAGAACAGTAGCTGCTCCTATGGTGGATATGCTTCTTCATAACTTGGATGAgtacaacaaattaaagaatgGACTTGAAGTGGAGAAAGCTTTAAATTCAGAGCCAGTTCCACTTAGTTCTGGAGACAGAACTGCAATTTCTAAGGGTTTGCCAGGAGCACTTGCAAAAAAAGCTCTTGCTGTTGTTGAAGCATTGGAAGGAAAGCGGGTGGAGACATTCATGGATGCTTTTAAAGAGGTAGCAGAAGAGAGTGGGTTATCTTTGAAGAAGCTTGACAAGAAACTAGAAAGAACACTTCTACATTCATATCGTAAGGAATTGACATCTGAAATTTCTGCCGAGACTGACCCAGTCTCACTTCTGGCAAAAATTGTTTCTTTACTTTACATACAGATTTACCACAAAGCTCTTCAAGCCCCTGGAAGAGCCATTTCCGTCGCCATCTCCCAATTGAAggaTAAGCTAGATGAGTCAGCATTCAAGATTTTAACTGATTATCAGACCGCTACAGTGACTCTTCTAGCATTATTAGCAGCTGCTACTGGCGATGAAGAGGATTGTACATCTGATAGAATACTGAGCAAACGGGAACTCCTGGAGAGCCAAATGCCCACCCTGAAAAGCTTGGTTTTGAGCACTTCACAATCTTCATAG	2463	0.408	MDDELLELQKQFEFAQQAKSSIRLSERNVVELVQKLQELHIIDFDLLHTVSGKEYITPEQLRNEMVAEVNKLGRVSLIDLADATGVDLYHVEKQAQQVITDHPEMMLIQGEIMSESYWDSVAEETNERLQECSQIALTELAAQLNVGLELVASMLEPRLGTVVKGRLEGGQLYTPAYVARVSAMVRGAARGITVPTNLSALWSLLQQLLQEMDGTSGVAVDGSFFHSLFNGLVKECEVLGSLRAGIHWTPAVFAVAQKESVDSFFSQNSFVSYDVLHKLGIPQPIQFLQSRYPEGIPLVTTFVHPSMIEMLDAAIEDALERGSWSDSLSLLPPSFTPQDASKMLSLCQSVQSALKSNRAQIFGDFYVLSNSFMKDICEHLVKEMETLGVSGSSGSKMSGDSQVANEAKVGQDLSRPNESSETAIEGGAIKHADRGSKKKKGKSTVNAGANVSESASDIQEQTSTKSKRNQRRSKDTSSSQMSDLKGSRKESIKRKEDNLSSPSEDWIMQKIITLVPDFEEQCMDDPETILRPLANHLRPTIIASWMEKKKALFTENAERMKCLIDNLQKKLDECFLNMQLYEKALELFEDDQSTSVVLRRHLLRTVAAPMVDMLLHNLDEYNKLKNGLEVEKALNSEPVPLSSGDRTAISKGLPGALAKKALAVVEALEGKRVETFMDAFKEVAEESGLSLKKLDKKLERTLLHSYRKELTSEISAETDPVSLLAKIVSLLYIQIYHKALQAPGRAISVAISQLKDKLDESAFKILTDYQTATVTLLALLAAATGDEEDCTSDRILSKRELLESQMPTLKSLVLSTSQSS	820

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto12g0228	820	MobiDBLite	consensus disorder prediction	390	501	-	-
	Sto12g0228	820	MobiDBLite	consensus disorder prediction	390	421	-	-
	Sto12g0228	820	Coils	Coil	550	584	-	-
	Sto12g0228	820	PANTHER	E3 UFM1-PROTEIN LIGASE 1	1	818	IPR018611	GO:0061666\|GO:0071569
	Sto12g0228	820	MobiDBLite	consensus disorder prediction	443	463	-	-
	Sto12g0228	820	MobiDBLite	consensus disorder prediction	486	501	-	-
	Sto12g0228	820	Coils	Coil	611	631	-	-
	Sto12g0228	820	Pfam	E3 UFM1-protein ligase 1	4	288	IPR018611	GO:0061666\|GO:0071569

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto12g0228	1	786	EF-hand Containing Proteins	AT3G46220	63.151	0.0	977

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto12g0228	K22755		-	gmx:100808087	1207.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto12g0228	12	1349625	1357399	Sto12g0228	12	1349625	1357399	ECH