Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0219 ATGTGTAAAAGAGTGAGTGTGGATTCCTGCGTTCTACAACAATCGCATCCAGCGTCTCTGGACGAACAAGCTAATGCAGTGATTCACTGCTTCTATAACTTTGTTCTGTTCTGCAAAGTCAGGTATTGTGCTATCGATGTTCTTCCCGCTTATGCGTGGATGATCTTTTCAAGAGCTAAAGCTATTGATACACTGCCATGTTACTGCAACCAAACGCTGCCTCAGCTATATCGCATTTTCCATTCCAGCCATGGACGATCTCAATTCTCTACCTCAAGGCTTCGCCGGCAAATACCATTCATCACCCAAGTTAAAGAGGTGTACAACCCAGAAGAAGCTTTATCTCTCTTTCATGAGTACAAGAAATACGGGTTCAGGCACGATTACCCCTCCTATGCCGCATTACTTTACAAACTGGCTCGATCTAGAAACTTTGAAGCTGTTGAAACTATTCTTACTCATATACAAGACAGAGGCATACACTGTAAAGAAACTCTTTTTGTTGCTTTGATTCAACATTATGGTAAAGCCCATCTTCCTGATAAAGCTGTCGATCTTTTTCACAGAATGCCTTGGTTTAACTGCGTCCGTACATTGCAATCCTTCAATGCTCTTCTaaatattttgattgaaaatcaTCGGTTTGCGCAGGCGAATGATACTTTCAGTCAATCATATAAAATGGGTTTTCTTCCAAACACAGTTTCATTCAATATAATTATCAAGGGATGGTTGGCAAAGAATGATTTGGATAAAGCATGTGACATGTTCAATGAAATGCTGGAGAAGAAAGTACAGCCAAGTGTTGTGACATATAATAGTCTCATTGGATTCTTGTCTAGAAAGGGTGATTTAAGTAAAGCAATGGCTTTGCTTGAGGATATGACCCAGAAAGGAAAATACCCAAATCAAGTAACTTATGCATTGTTGATGGAAGGCTTGTGTTCCCTGGACAAGTATGAAGAAGCTAAGAAGCTTATGTTTGATATGGCATATCGAGGGTGCAAACCACGACTAATCAATTTTGCTGTTTTGATGAATGATCTGGGTAAGAGAGGAAAGATTGAGGAGGCAAAATCTTTACTTTATGAGATGAGAAAAAGGCGGTTCAAGCCAGATGTTGTAATTTACAATATATTGATCAATTATTTATGCAAGGAAGGTAAGACAGCGGAAGCATACAAAGTCCTAATTGAGATGCAGATTAAGGGTTGTGAACCAAATGCTGCTACGTACAGGATGATGGTTGATGGTTTCTGCCAAAATGGGGATTTTGAGGCAAGTTTGAATGTTTTGAATGCAATGTTAGCTAGTAAACATTATCCACGTTCAGAAACATTTAATTGTTTGGTTGTGGGCCTATTGAACTGTGGGAAGACTGATGATGGTTGCTTTGTTTTGGAAGAGATGGAGAAGAGAAAGGTTCAATTTGATGTACATAGTTGGGAAACTCTAGTGAAGAATGCTTGTGGTGAAGATGAAAACGCAAGTCAGCTTATTGATGACCTTTCATCCACTCAACAACTACATTATATAAGAGATCAGCCATGA 1551 0.3894 MCKRVSVDSCVLQQSHPASLDEQANAVIHCFYNFVLFCKVRYCAIDVLPAYAWMIFSRAKAIDTLPCYCNQTLPQLYRIFHSSHGRSQFSTSRLRRQIPFITQVKEVYNPEEALSLFHEYKKYGFRHDYPSYAALLYKLARSRNFEAVETILTHIQDRGIHCKETLFVALIQHYGKAHLPDKAVDLFHRMPWFNCVRTLQSFNALLNILIENHRFAQANDTFSQSYKMGFLPNTVSFNIIIKGWLAKNDLDKACDMFNEMLEKKVQPSVVTYNSLIGFLSRKGDLSKAMALLEDMTQKGKYPNQVTYALLMEGLCSLDKYEEAKKLMFDMAYRGCKPRLINFAVLMNDLGKRGKIEEAKSLLYEMRKRRFKPDVVIYNILINYLCKEGKTAEAYKVLIEMQIKGCEPNAATYRMMVDGFCQNGDFEASLNVLNAMLASKHYPRSETFNCLVVGLLNCGKTDDGCFVLEEMEKRKVQFDVHSWETLVKNACGEDENASQLIDDLSSTQQLHYIRDQP 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0219 516 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 86 506 - -
Sto12g0219 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Sto12g0219 516 Gene3D Tetratricopeptide repeat domain 101 249 IPR011990 GO:0005515
Sto12g0219 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Sto12g0219 516 Pfam PPR repeat family 372 421 IPR002885 -
Sto12g0219 516 Pfam PPR repeat family 232 276 IPR002885 -
Sto12g0219 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Sto12g0219 516 SUPERFAMILY TPR-like 77 397 IPR011990 GO:0005515
Sto12g0219 516 Pfam PPR repeat 446 474 IPR002885 -
Sto12g0219 516 Pfam PPR repeat 167 195 IPR002885 -
Sto12g0219 516 Pfam Pentatricopeptide repeat domain 291 352 IPR002885 -
Sto12g0219 516 Gene3D Tetratricopeptide repeat domain 250 366 IPR011990 GO:0005515
Sto12g0219 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Sto12g0219 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Sto12g0219 516 PANTHER OS05G0548600 PROTEIN 86 506 - -
Sto12g0219 516 TIGRFAM PPR: pentatricopeptide repeat domain 235 268 IPR002885 -
Sto12g0219 516 TIGRFAM PPR: pentatricopeptide repeat domain 375 409 IPR002885 -
Sto12g0219 516 TIGRFAM PPR: pentatricopeptide repeat domain 446 478 IPR002885 -
Sto12g0219 516 TIGRFAM PPR: pentatricopeptide repeat domain 411 442 IPR002885 -
Sto12g0219 516 TIGRFAM PPR: pentatricopeptide repeat domain 343 374 IPR002885 -
Sto12g0219 516 TIGRFAM PPR: pentatricopeptide repeat domain 305 337 IPR002885 -
Sto12g0219 516 TIGRFAM PPR: pentatricopeptide repeat domain 270 303 IPR002885 -
Sto12g0219 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Sto12g0219 516 Gene3D Tetratricopeptide repeat domain 439 508 IPR011990 GO:0005515
Sto12g0219 516 Gene3D Tetratricopeptide repeat domain 367 438 IPR011990 GO:0005515
Sto12g0219 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0219 Sto-Chr12 1309897 1311613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0219 183 503 Glycosyltransferase AT1G05670 26.316 4.25e-42 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0219 - - lang:109363290 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0219 12 1309897 1311613 Sto12g0219 12 1309897 1311613 ECH