Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0215 ATGGAGATTGATCTTACTCCCCAGTTGGCCAAGAAGGTGTGCGGAGGCAATGGTGGGTCCTACTACGCGTGGTCCCCATCTGAGCTTCCCATGTTACGCCATGGCAACATTGGTGCCGCTAAGCTCGCTCTTGAGAAGAACGGTTTCTCGGTTCCTAGCTACTGCGATTCTTCCATCGTTGCCTACGTTCTCCAAGgAAACGGAGTTGCTGGAATTGTTCTCCCTGAATCAGAAGAGAAGGTTATTGCAGTTAAAAAGGGTGATGCAATAGCGCTTCCTTTTGGTGTTGTAACATGGTGGCACAACAAGGAAGATACTGAGCTGGTTGTTCTTTTCCTGGGCGACACATCAAAAGCTCACAAGGCTGGTGAATTCACCAACTTCTTCCTGACAGGTTCTAATGGAATCTTCACCGGTTTTTCCACTGAGTTTGTGGGCAGAGCTTGGGACCtcgaagaaaaggatgttaagaCCCTTGTTGGAAGCCAATCAGGAAAAGGAATTGTGAAGCTTGATGGGAAAATCAACCTTCCTGAGCCAAAGCAGGATCATCGTAAGGGCATGGCATTGAACTGTGAAGAGGCTCCATTGGATGTTGACATTAAGAATGGTGGAAGAGTGGTGGTTCTGAACACCAAGAATCTTCCATTGGTTGGTGAGGTTGGACTTGGAGCAGATCTTGTTAGGTTGGATGGAAGTGCAATGTGTTCTCCTGGGTTTTCTTGTGACTCTGCCTTACAGGTTACTTACATTGTCAGAGGAAGTGGTCGAGTTCAGGTTGTTGGGCCTGACGGTCGTAGAGTTTTGGAGACAACTATAAAAGCTGGTAATCTGTTCATTGTACCAAGGTTCTTCGTAGTCTCAAAGATTGCTGATCCCGATGGAATGGAGTGGTTCTCTATCATCACCACCCCTAACCCTGTTTTTACCCACTTAGCTGGAAGTTCTTCAGTGTGGAAGGCTCTGTCTCCTACAGTTCTACAGGCTGCTTTCAATGTGGATTCAGGAGTTGAACAACTCTTCCGTTCAAAGAGGACTTCCGATGCCATTTTCTTCCCTCCACCAAAGTAG 1071 0.4631 MEIDLTPQLAKKVCGGNGGSYYAWSPSELPMLRHGNIGAAKLALEKNGFSVPSYCDSSIVAYVLQGNGVAGIVLPESEEKVIAVKKGDAIALPFGVVTWWHNKEDTELVVLFLGDTSKAHKAGEFTNFFLTGSNGIFTGFSTEFVGRAWDLEEKDVKTLVGSQSGKGIVKLDGKINLPEPKQDHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGSAMCSPGFSCDSALQVTYIVRGSGRVQVVGPDGRRVLETTIKAGNLFIVPRFFVVSKIADPDGMEWFSIITTPNPVFTHLAGSSSVWKALSPTVLQAAFNVDSGVEQLFRSKRTSDAIFFPPPK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0215 356 CDD cupin_11S_legumin_N 4 173 - -
Sto12g0215 356 SUPERFAMILY RmlC-like cupins 17 345 IPR011051 -
Sto12g0215 356 Gene3D Jelly Rolls 3 194 IPR014710 -
Sto12g0215 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Sto12g0215 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Sto12g0215 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Sto12g0215 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Sto12g0215 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Sto12g0215 356 CDD cupin_11S_legumin_C 198 353 - -
Sto12g0215 356 Gene3D Jelly Rolls 195 356 IPR014710 -
Sto12g0215 356 PANTHER - 2 346 - -
Sto12g0215 356 SMART Cupin_1_3 195 339 IPR006045 -
Sto12g0215 356 SMART Cupin_1_3 3 157 IPR006045 -
Sto12g0215 356 PANTHER OS03G0336100 PROTEIN-RELATED 2 346 - -
Sto12g0215 356 Pfam Cupin 14 156 IPR006045 -
Sto12g0215 356 Pfam Cupin 199 335 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0215 Sto-Chr12 1285482 1287434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0215 35 347 Miscellaneous Gene Families AT2G18540 22.527 7.45e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0215 - - gmx:100782055 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0215 12 1285482 1287434 Sto12g0215 12 1285482 1287434 ECH