Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0170 ATGGGTCAAGGTCTGAGCTGCACAGGGAGCCATGAACATGGCCTCTTCACTGCGGTGCAGCATGGGGACCTCGTCACTGTTACAAATCTCTTGCAGAGAGACCCAACTCTCCTGCACCACACTACTGTCTACGATCGCCATTCTGCCCTTCATATAGCCGCTGCTAATGGCCAGATCGAGATTCTGTCTATGCTGTTAGATGGATCTGTTAATCCAGATGTTTTGAATCGTCAGAAACAGACTCCGCTCATGTTGGCTGCAATGCACGGAAAGATCACCTGTTTGAAAAAGCTCCTTGAGGTTGGAGCTAATGTAGGTGAAACTTGCCCATTATTAATTCCCTCTCCTGATTCTGTATTGATGTTTGATTCACTACACGGTAGAACCTGCTTGCACTATGCTGCCTACTACGGGCATTCTTCTTGCCTAGAAGCAATTCTTTCTGCTGCACAGTCTAGCCCAGTGGCTGCTTCTTGGTTGGTGCTTTGCTGGGGATTTGCTCGGTTTGTGAATATTCGAGATGGTAGAGGAGCAACGCCATTGCACTTGGCAGCTCGTCAAAGGCGGCCTGAATGTGTGCATATTCTATTAGACAAAGGAGCTCTAGTCTGTGCTTCAACAGGCGGATATGGCTGTCCTGGTAGCACTCCTCTTCATTTAGCTGCCAGAGGAGGATCTCTGGATTGTATTCGCGAACTGTTGGCATGGGGTGCTGATCGTCTTCAACGAGATGCATCTGGGCGGATACCATATGTAGTTGCTCTTAAACACAAACATGGAGCATGTGCAGCGTTGCTAAATCCTACGTCTGCTGAGCCTCTTGTCTGGCCTTCACCATTGAAGTTCATCAGTGAGCTTAATCCAGATGCCAAAGCATTATTAGAAGGGGCCTTGATGGATGCAAACAGGGAAAGGgagaaaaatatattgaaagGAAGTGCTTACTCTCTTCCATCTCCATCACATTCTGACAATGGGGTAGATGACAGTATCTCTGAGGTATGCACAATTGAAGTCCAGGATTGTGGCCACCAGATGTGTGCGCAATGCACTCTAGCCCTCTGTTGCCACAACAAACCCAATCCTGCTACTGCTAGCCTTAACCCACCAGTCTGTCCATTTTGCCGAAGCACCATTGCTAGACTGGTGGTTGTGAAGATAGAAAGCCACGATGACGCAGAAGTAGATGCTGGAGATATCAGTTCTTCCAAGCTAAGCAAATCGAGAAAATCCAGAAACTTGAATGAGGGTGGCAGCAACAGCTTCAAGGGACTATCATTTGGAAAGATGGGTGGCCGAAGCTCTGGAAGGATTGCTGCTGAAAATGAGTGGGTTGATAAACAGTGA 1347 0.4736 MGQGLSCTGSHEHGLFTAVQHGDLVTVTNLLQRDPTLLHHTTVYDRHSALHIAAANGQIEILSMLLDGSVNPDVLNRQKQTPLMLAAMHGKITCLKKLLEVGANVGETCPLLIPSPDSVLMFDSLHGRTCLHYAAYYGHSSCLEAILSAAQSSPVAASWLVLCWGFARFVNIRDGRGATPLHLAARQRRPECVHILLDKGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHKHGACAALLNPTSAEPLVWPSPLKFISELNPDAKALLEGALMDANREREKNILKGSAYSLPSPSHSDNGVDDSISEVCTIEVQDCGHQMCAQCTLALCCHNKPNPATASLNPPVCPFCRSTIARLVVVKIESHDDAEVDAGDISSSKLSKSRKSRNLNEGGSNSFKGLSFGKMGGRSSGRIAAENEWVDKQ 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0170 448 Pfam Ankyrin repeats (3 copies) 15 106 IPR002110 GO:0005515
Sto12g0170 448 Pfam Ankyrin repeats (3 copies) 131 239 IPR002110 GO:0005515
Sto12g0170 448 MobiDBLite consensus disorder prediction 396 411 - -
Sto12g0170 448 SUPERFAMILY Ankyrin repeat 15 269 IPR036770 -
Sto12g0170 448 Gene3D - 110 272 IPR036770 -
Sto12g0170 448 SMART ANK_2a 45 74 IPR002110 GO:0005515
Sto12g0170 448 SMART ANK_2a 126 156 IPR002110 GO:0005515
Sto12g0170 448 SMART ANK_2a 78 107 IPR002110 GO:0005515
Sto12g0170 448 SMART ANK_2a 176 205 IPR002110 GO:0005515
Sto12g0170 448 SMART ANK_2a 10 39 IPR002110 GO:0005515
Sto12g0170 448 SMART ANK_2a 213 242 IPR002110 GO:0005515
Sto12g0170 448 ProSiteProfiles Ankyrin repeat profile. 176 208 IPR002110 GO:0005515
Sto12g0170 448 ProSiteProfiles Ankyrin repeat profile. 78 105 IPR002110 GO:0005515
Sto12g0170 448 ProSiteProfiles Ankyrin repeat region circular profile. 213 239 - -
Sto12g0170 448 MobiDBLite consensus disorder prediction 396 448 - -
Sto12g0170 448 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Sto12g0170 448 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Sto12g0170 448 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 448 - -
Sto12g0170 448 ProSiteProfiles Ankyrin repeat region circular profile. 176 201 - -
Sto12g0170 448 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Sto12g0170 448 Gene3D - 7 109 IPR036770 -
Sto12g0170 448 ProSiteProfiles Ankyrin repeat profile. 213 245 IPR002110 GO:0005515
Sto12g0170 448 PANTHER HOMEOBOX PROTEIN WARIAI 1 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0170 Sto-Chr12 1021925 1024686 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0170 36 266 Miscellaneous Gene Families AT5G02620 26.360 7.59e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0170 - - vvi:100263866 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0170 12 1021925 1024686 Sto12g0170 12 1021925 1024686 ECH