Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0085 ATGCAGAAGCCACCACAGCCTCAAGACTTTGCCCTAAAGGAAACCTCCCCCAAAATTGGGGCAGGGGACAAGCTGTCATGTACATATGACCTCGTTGAACAAATGCAGTACCTGTATGTTCGTGTGGTGAAAGCCAAGGACTTACCCGGGAAGGATGTCACCGGTAGTTTGGACCCCTATGTGGAGGTGAAACTTGGAAACTACAAGGGCCTTACCAAGCATTTCGAGAAGAAGTCCAATCCTGAGTGGAACCAAGTTTTTGCCTTCTCAAAAGATCGAATTCAAGCTTCAGTTTTGGAAGTTGTTGTGAAGGATAAGGATGTTGTTGTTGATGACTTTGTAGGGAGGGTCTTGTTTGACTTGAATGAGATCCCAAAACGTGTTCCTCCAGACAGCCCATTGGCTCCCCAGTGGTATAGGCTGGAAGATAGGAAGGGTGATAAAGCTAAGGGAGAACTAATGCTGGCTGTTTGGATGGGAACACAAGCAGATGAGGCATTTCCTGATTCATGGCATTCTGATGCAGCATCGGTTGGTCCTGAAGCGGTTGGTAACATAAGATCAAAAGTTTACCTTTCTCCCAAGCTTTGGTATGTGAGGGTCAATGTTATTGAAGCTCAGGACTTGATACCAAATGATAAAAGCCGGTATCCCGAAGTGTTTGTAAAAGTTAATCTAGGAAACCAGTTTTTAAGAACTAGAGTATCTCCAAGTAAGACTATAAATCCTATGTGGAATGAGGACTTGATGTTTGTTGTTGCTGAGCCATTTGAGGAACCATTGATTCTCACTGTGGAAGACAGAGTTGGGCCCAACAAAGATGAAATCCTGGGCAGGTGTGTGATTCCTCTGCAGATTGTGCAAAGGAGGTTAGACCACAAGCCTGTGAACACTAGATGGTATAATCTTGAGAAGCATGTGATTATTGAAGGGGAACAGAAGAAGGAGACCAAATTTGCGAGTAGGATACATTTGAGGGTGTGTTTGGATGGTGGGTATCATGTGTTGGATGAATCAACTCATTATAGTAGTGATCTTAGGCCAACTGCAAAACAGCTTTGGAAGTCCAGCATTGGAATTCTTGAAGTGGGGGTTATAAGTGCACAAGGGCTTATGCCAATGAAGACAAGAGATGGTCGAGGGACCACAGATGCTTATTGTGTAGCTAAATATGGGCAGAAATGGATTCGCACAAGGACAATCGTGGATAGCTTTGCTCCAAAGTGGAATGAGCAATACACATGGGAAGTTTTTGATCCATGTACTGTTATAACAGTTGGGGTTTTTGATAATGGGCATATTCAAGGGGGAGACAAATCCGGAGGATTGAAGGATTCAAGGATAGGGAAGGTGAGGATTCGGTTGTCCACTCTTGAAGCAGACCGGGTTTACACACACTCATATCCTCTTCTAGTACTCCATACTTCAGgtgtgaagaaaatgggggAATTGCAATTGGCTGTGAGGTGGAGGCCAAGACACCCTCCTCACATGGACACCCGACTCTCTCACGCCGATGCTGCTCATCCCGATGAATTGGATGAAGAGTTCGATACATTCCCGACTTCACGGTCCTCGGATATTGTTAGAATGAGGTATGATCGTCTGAGAAGCATTGCAGGGAGGGTGCAAACTGTTGTGGGTGACTTGGCGACTCAAGGAGAAAGGTTTCAGAATCTGCTGAGTTGGAGAGACCCAAGGGCTACCACTCTGTTTGTGACAATGTGTTTCATTGCAGCGATAGTTCTGTATGTTACTCCTTTCCAAGTAGTTTGCCTTCTTCTAGGCTTTTATGTGCTGAGGCATCCCAGATTTCGCCAGAAACTTCCTTCAGTTCCTCTCAACTTCTTTAGGAGGCTGCCTGCTAGATCAGATAGCTTGCTGTAA 1887 0.4473 MQKPPQPQDFALKETSPKIGAGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSLDPYVEVKLGNYKGLTKHFEKKSNPEWNQVFAFSKDRIQASVLEVVVKDKDVVVDDFVGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKAKGELMLAVWMGTQADEAFPDSWHSDAASVGPEAVGNIRSKVYLSPKLWYVRVNVIEAQDLIPNDKSRYPEVFVKVNLGNQFLRTRVSPSKTINPMWNEDLMFVVAEPFEEPLILTVEDRVGPNKDEILGRCVIPLQIVQRRLDHKPVNTRWYNLEKHVIIEGEQKKETKFASRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWKSSIGILEVGVISAQGLMPMKTRDGRGTTDAYCVAKYGQKWIRTRTIVDSFAPKWNEQYTWEVFDPCTVITVGVFDNGHIQGGDKSGGLKDSRIGKVRIRLSTLEADRVYTHSYPLLVLHTSGVKKMGELQLAVRWRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRSSDIVRMRYDRLRSIAGRVQTVVGDLATQGERFQNLLSWRDPRATTLFVTMCFIAAIVLYVTPFQVVCLLLGFYVLRHPRFRQKLPSVPLNFFRRLPARSDSLL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0085 628 Gene3D C2 domain 185 329 IPR035892 -
Sto12g0085 628 Gene3D C2 domain 344 492 IPR035892 -
Sto12g0085 628 Gene3D C2 domain 26 159 IPR035892 -
Sto12g0085 628 CDD C2B_MCTP_PRT_plant 37 161 - -
Sto12g0085 628 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE-LIKE PROTEIN 5 490 - -
Sto12g0085 628 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE-LIKE PROTEIN 489 628 - -
Sto12g0085 628 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 5 490 - -
Sto12g0085 628 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 489 628 - -
Sto12g0085 628 Pfam Plant phosphoribosyltransferase C-terminal 487 628 IPR013583 -
Sto12g0085 628 ProSiteProfiles C2 domain profile. 19 139 IPR000008 -
Sto12g0085 628 CDD C2C_MCTP_PRT_plant 198 348 - -
Sto12g0085 628 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 174 IPR035892 -
Sto12g0085 628 ProSiteProfiles C2 domain profile. 342 468 IPR000008 -
Sto12g0085 628 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 359 499 IPR035892 -
Sto12g0085 628 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Sto12g0085 628 SMART C2_3c 37 133 IPR000008 -
Sto12g0085 628 SMART C2_3c 360 467 IPR000008 -
Sto12g0085 628 SMART C2_3c 198 296 IPR000008 -
Sto12g0085 628 Pfam C2 domain 197 303 IPR000008 -
Sto12g0085 628 Pfam C2 domain 359 470 IPR000008 -
Sto12g0085 628 Pfam C2 domain 37 130 IPR000008 -
Sto12g0085 628 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 197 350 IPR035892 -
Sto12g0085 628 CDD C2D_MCTP_PRT_plant 360 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0085 Sto-Chr12 563709 566021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0085 31 628 Lipid Metabolism Gene Families AT3G57880 34.231 4.51e-85 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0085 - - gmx:100809753 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0085 12 563709 566021 Sto12g0085 12 563709 566021 ECH