Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0073 ATGATTGAATGTTCTGTGAGTATGGATATCACAAATAATGGTGGTGCTTTCTTCAACCGCACCAGCTTCCCAGAGGGATTTACCTTTGGGGCATCATCATCTGCTTACCAATTTGAAGGTGCAGCAAACGAAGGAGGCAAAGGACCCAGTATATGGGATGCTTTCACTCATAAATATCCAGAAAAGATAAGGGACAGAAGTAATGGAGACGTTGCTACGGATCAATACCATCGTTACAAGGAAGATGTTGCGTTGATGAAGGACATGAACTTGAATTCTTATAGATTCTCTATCTCTTGGTCCAGAATCTTGCCAAAAGGAAAGCTCAGTGGAGGTATAAACAAAGAAGGAATCGATTACTACAACAATTTCATCAACGAGCTTTTAGACAACGGTATAGAGCCATTTGTGACAATTTTTCATTGGGATCTTCCGCTGAGCTTGGAAGAAGAATATGGAGGtttcttaaaccccaaaataaTAAAGGATTTTGTGGATTATGCGGAGTTATGCTTCAGGGAATTTGGAGATAGAGTGAAGCATTGGACAACAATAAATGAGCCATGGACATACAGCCTATATGGTTATGGAGAAGGAGTGATTGCACCAGGGAGATGCTCTACCTCCCAAAATCAAGCAAATTGTAACTTAGGCGGAGATTCAGGCACCGAACCCTACATTGTGGCCCACCACTTCTTACTTGCTCATGCTTCTGCCGTTAAACTCTATAGGACCAAGTTTCAGGCATCTCAAAAGGGAGAGATAGGGATAGCACTCGCCTCTAATTGGATAGCCCCATTCTCTGATTCCCAATTGGACTATGAAGCCGCTGAAAGAGGCCGCGATTTTATGTATGGCTGGTTTTTGGAACCCTTAGTGAGAGGAAAATACCCACAATCTATGAGACGTTTGGTTGGAAGGCGATTGCCAAAGTTCTCACCACACCAGAGGAGGCTCATCATTGGCTCTTTCGATTTCATTGGATTAAATTTCTATACCACCAATTATGCTGTCTATGCTCCTCAATTTCTCAACGCCCCTCACAGCTGTATCACCGATTCTCTTGCTCAACTCACATTTCGTCCTAAGGACGATAGGCCTATTGCTCCCAATGGGTTGAATGGTTATCCAACGGGAATTCGAGACTTACTGCTCTATGTCAACTCCAAGTATAACAGCCCTGTCATCTACATTACTGAAACTGGTATGGATGATTACCAAGATGCAAATGTGCCAGTCGACCAAATTCTGGCAGATACATCTAGAATTGATTATCTTCAAAACAATCTCTATTATCTTAACACTGCAATAAGTTCAGGGTATAAGAATCAATATGGGCTTGTGTTTGTGGATTATAAAAATGAGCTGCAACGATATCCAAAACAGTCGGCACAATGGTATAAGAATTTCCTCCGAACAAATGATGATAGACCTGCACATGACACTATATGA 1452 0.4146 MIECSVSMDITNNGGAFFNRTSFPEGFTFGASSSAYQFEGAANEGGKGPSIWDAFTHKYPEKIRDRSNGDVATDQYHRYKEDVALMKDMNLNSYRFSISWSRILPKGKLSGGINKEGIDYYNNFINELLDNGIEPFVTIFHWDLPLSLEEEYGGFLNPKIIKDFVDYAELCFREFGDRVKHWTTINEPWTYSLYGYGEGVIAPGRCSTSQNQANCNLGGDSGTEPYIVAHHFLLAHASAVKLYRTKFQASQKGEIGIALASNWIAPFSDSQLDYEAAERGRDFMYGWFLEPLVRGKYPQSMRRLVGRRLPKFSPHQRRLIIGSFDFIGLNFYTTNYAVYAPQFLNAPHSCITDSLAQLTFRPKDDRPIAPNGLNGYPTGIRDLLLYVNSKYNSPVIYITETGMDDYQDANVPVDQILADTSRIDYLQNNLYYLNTAISSGYKNQYGLVFVDYKNELQRYPKQSAQWYKNFLRTNDDRPAHDTI 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0073 483 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 11 440 - -
Sto12g0073 483 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 439 475 - -
Sto12g0073 483 SUPERFAMILY (Trans)glycosidases 16 472 IPR017853 -
Sto12g0073 483 PANTHER GLYCOSYL HYDROLASE 11 440 IPR001360 GO:0004553|GO:0005975
Sto12g0073 483 PANTHER GLYCOSYL HYDROLASE 439 475 IPR001360 GO:0004553|GO:0005975
Sto12g0073 483 PRINTS Glycosyl hydrolase family 1 signature 323 337 IPR001360 GO:0004553|GO:0005975
Sto12g0073 483 PRINTS Glycosyl hydrolase family 1 signature 396 404 IPR001360 GO:0004553|GO:0005975
Sto12g0073 483 PRINTS Glycosyl hydrolase family 1 signature 444 456 IPR001360 GO:0004553|GO:0005975
Sto12g0073 483 Pfam Glycosyl hydrolase family 1 21 440 IPR001360 GO:0004553|GO:0005975
Sto12g0073 483 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 27 41 IPR033132 -
Sto12g0073 483 Gene3D Glycosidases 5 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0073 Sto-Chr12 486483 488831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0073 18 467 Glycoside Hydrolase AT5G42260 50.105 6.13e-163 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0073 - K01188 gmx:100784723 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0073 12 486483 488831 Sto12g0073 12 486483 488831 ECH