Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0056 ATGGACCCCACCGAACTGAAGCGCGTATTCCAAATGTTCGATCGGAATGGGGATGGGCGAATTACGAAGGAGGAGCTAAGCGATTCGCTGGAGAATTTGGGGATTTTCATCCCCGAGGATGACCTAAGGCAAATGATCGACAAGATCGACATGAACGGAGACGGGTGTGTGGACATTGGGGAATTCGGTGAGTTGTACCAGTCCTTAATGAATGGGcgtgatgaggaggaggaggtggacATGCGTGAGGCATTCAACGTTTTCGATCAAAACGGCGACGGATTTATCACGGTGGAGGAGTTGAGATCGGTGTTGTCGTCGCTAGGGCTGAAACAGGGGAAAGCGGTGGAAGATTGCAAGAAGATGATAATGAAGGTAGATGTCGATGGAGATGGCAAGGTGGATTACAACGAGTTTAAGCAAATGATGAAGGCAGGTGGCTTCACTGCTCTCAGCTAA 459 0.4662 MDPTELKRVFQMFDRNGDGRITKEELSDSLENLGIFIPEDDLRQMIDKIDMNGDGCVDIGEFGELYQSLMNGRDEEEEVDMREAFNVFDQNGDGFITVEELRSVLSSLGLKQGKAVEDCKKMIMKVDVDGDGKVDYNEFKQMMKAGGFTALS 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0056 152 SMART efh_1 5 33 IPR002048 GO:0005509
Sto12g0056 152 SMART efh_1 118 146 IPR002048 GO:0005509
Sto12g0056 152 SMART efh_1 80 108 IPR002048 GO:0005509
Sto12g0056 152 SMART efh_1 41 69 IPR002048 GO:0005509
Sto12g0056 152 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 152 - -
Sto12g0056 152 ProSitePatterns EF-hand calcium-binding domain. 127 139 IPR018247 -
Sto12g0056 152 Pfam EF-hand domain pair 80 144 IPR002048 GO:0005509
Sto12g0056 152 Pfam EF-hand domain pair 5 67 IPR002048 GO:0005509
Sto12g0056 152 SUPERFAMILY EF-hand 5 143 IPR011992 -
Sto12g0056 152 Gene3D - 79 145 - -
Sto12g0056 152 ProSitePatterns EF-hand calcium-binding domain. 89 101 IPR018247 -
Sto12g0056 152 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Sto12g0056 152 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Sto12g0056 152 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Sto12g0056 152 Gene3D - 2 78 - -
Sto12g0056 152 CDD EFh 80 144 IPR002048 GO:0005509
Sto12g0056 152 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Sto12g0056 152 ProSiteProfiles EF-hand calcium-binding domain profile. 114 149 IPR002048 GO:0005509
Sto12g0056 152 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Sto12g0056 152 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0056 Sto-Chr12 376093 376551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0056 1 150 EF-hand Containing Proteins AT2G43290 71.242 1.73e-75 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0056 K13448 - csv:101210877 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0056 12 376093 376551 Sto12g0056 12 376093 376551 ECH