Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0023 ATGGGGAAGGTTAGCatgatatttataattattggaGTAGTAGGCATAGCAGCATATGGAGTGAGTGGTCAAAACGACGTGTCTGTGGCTGATGTGGTCACCCAAGACTTCTTTAACGCTATCATCAATGAAGCCGACGCTGGCTGTGCTGGAAAAAGCTTCTACACGCGTGCTGCTTTCCTCGACGCTCTTAATTCCTATGATCAATTCGGTAGGATTGGTTCTAATGATGATTCCAAGCGTGAGATTGCTGCTGCTTTTGCCCATTTCACCCATGAAACTGGACatttctgCTACATAGAAGAGATCGACGGTGCGTCGAAGGATTATTGTGATGAAAACAACACGCAGTACCCTTGCGCGGCGAACAAAGGATACTATGGTCGCGGACCCATCCAGCTATCGTGGAACTTCAACTATGGACCAGCTGGAGAGAGCAATGGGTTTGACGGACTCAACTCTCCTGAAACGGTGGCCAATGACGCGGTGGTATCCTTCAAGACTGCATTGTGGTATTGGATGCAGCATGTGCGGCCTGTCGTCACCCAAGGCTTTGGCGCTACCATTAGAGCCATTAATGGCCAACTTGAATGTGACGGTGCCAACCCCACCACCGTCCAGGCTCGTCTTAATTATTACACCCAATATTGTTCCCACCTCGGTGTTGCTACTGGTGATAATCTCACTTGCTag 693 0.4762 MGKVSMIFIIIGVVGIAAYGVSGQNDVSVADVVTQDFFNAIINEADAGCAGKSFYTRAAFLDALNSYDQFGRIGSNDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDENNTQYPCAANKGYYGRGPIQLSWNFNYGPAGESNGFDGLNSPETVANDAVVSFKTALWYWMQHVRPVVTQGFGATIRAINGQLECDGANPTTVQARLNYYTQYCSHLGVATGDNLTC 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0023 230 PANTHER CHITINASE-RELATED 9 230 - -
Sto12g0023 230 Pfam Chitinase class I 183 230 IPR000726 GO:0004568|GO:0006032|GO:0016998
Sto12g0023 230 Pfam Chitinase class I 32 177 IPR000726 GO:0004568|GO:0006032|GO:0016998
Sto12g0023 230 Gene3D - 27 230 - -
Sto12g0023 230 ProSitePatterns Chitinases family 19 signature 2. 164 174 IPR000726 GO:0004568|GO:0006032|GO:0016998
Sto12g0023 230 SUPERFAMILY Lysozyme-like 28 230 IPR023346 -
Sto12g0023 230 ProSitePatterns Chitinases family 19 signature 1. 49 71 IPR000726 GO:0004568|GO:0006032|GO:0016998
Sto12g0023 230 PANTHER ENDOCHITINASE EP3-LIKE 9 230 - -
Sto12g0023 230 CDD chitinase_GH19 33 230 - -
Sto12g0023 230 PIRSF Endochitinase 8 230 IPR016283 GO:0004568|GO:0005975
Sto12g0023 230 Gene3D Endochitinase, domain 2 101 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0023 Sto-Chr12 191219 192237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0023 25 230 Glycoside Hydrolase AT3G54420 75.728 2.37e-119 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0023 K01183 - gmx:100776582 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0023 12 191219 192237 Sto12g0023 12 191219 192237 ECH