Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2200 ATGGCGGCCTCTAAGAGGATTTTGAAGGAGCTCAAGGATCTCGAGAAAGATCCTCCTACTTATTGCAGTGCTGGTCCAGTGGCTGAAGACATATTTCATTGGCATGCTACATTTATGGGTCCTCCTGACAGTCCCTATGCTGGTGGAGTATTTCATGTCAATGTTCAATTTCCTCCAGAGTATCCCTTTCAACCTCCCAAGGTTTCTTTTCGGACAAAGGTGTTTCACCCCAATATTAACCCCAAAGGGAGCATATGTCTTGACATACTGAAGGAGGAATGGAGTCCTGCACTAACAATATCAAAGGTTTTGCTCTCGATCTGCTCTCTCTTAACAGACCCTAATCCTGATCATCCTCTAGTGCCAAGGATTGCCAGCATGTACAAGAATGACAGGAGCAGGTATGATTTCCTAGCAAGAAGATGGACCCAGAAGTATGCTATGGGGACTTAG 453 0.4525 MAASKRILKELKDLEKDPPTYCSAGPVAEDIFHWHATFMGPPDSPYAGGVFHVNVQFPPEYPFQPPKVSFRTKVFHPNINPKGSICLDILKEEWSPALTISKVLLSICSLLTDPNPDHPLVPRIASMYKNDRSRYDFLARRWTQKYAMGT 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2200 150 Gene3D Ubiquitin Conjugating Enzyme 1 150 IPR016135 -
Sto11g2200 150 PANTHER BNAA01G32320D PROTEIN 4 147 - -
Sto11g2200 150 Pfam Ubiquitin-conjugating enzyme 6 141 IPR000608 -
Sto11g2200 150 CDD UBCc 4 143 IPR000608 -
Sto11g2200 150 SUPERFAMILY UBC-like 2 148 IPR016135 -
Sto11g2200 150 SMART ubc_7 5 148 - -
Sto11g2200 150 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 4 147 - -
Sto11g2200 150 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 75 90 IPR023313 -
Sto11g2200 150 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 2 148 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2200 Sto-Chr11 20916135 20919507 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2200 2 116 Miscellaneous Gene Families AT1G17280 35.000 1.22e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2200 K06689 - csv:101210687 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g2200 11 20916135 20919507 Sto11g2200 11 20916135 20919507 ECH