LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto11g1858	atggcgtTAACACTTCGATCTTCAAATTCTTTCTTTAACCATACAGAAATCAAAGTCGTCAAGTCACCTGACGACTTCCCTTGCACAGTTTGCTTCGCAAGGACCAAGCCCTCTTTCCGTCTCCGAGCAAAGAGCACGATGCAAGAGCCACCGCATATCTCACGCGCCGCCGCCTCCGCCGCCACCGACGTGGTCTTAGAGTTAGAAGCAAAGGAGAAGCTGCACCCACCATTGGTTGCCCCTCATCGGCACGACGATTCCATGAGAGTGCCTGTGTTTGTGATGATGCCATTGGACACAGTGACGATGGGAGGGACGTTGAATAAGGCACGAGCCATGAATGCTAGTTTGATGGCGCTCAAGAGTGCAGGAGTGGAAGGAGTAATGGTGGATGCTTGGTGGGGTTTGGTAGAAAAAGATGGGCCTTTAAGGTATAACTGGGAAGCCTATGTTGAGCTTGTTCAAATGGTACAAAAGCATGGATTGAAGCTTCAAGTCGTCATGTCTTTCCATCAGTGTGGAGGAAATGTTGGCGACTCCTGCAGTATTCCTCTGCCCCCATGGGTGCTTGAAGAAATCAGCAAGAACCCTGATTTGGTTTACACAGACAGATCTGGGAGAAGAAATCCAGAGTATATCTCTTTGGGGTGTGATTCAATACCTGTTCTAAGAGGAAGGACGCCTCTTCAGGTCTACTCTGATTTCATGACGAGTTTTCGTGACAGATTCAGAGACTACCTGGGCAGTGTTATAGTGGAAATTCAAGTGGGGATGGGTCCTTGTGGGGAACTCAGATATCCATCATATCCAGAAAGCAACGGAACCTGGAGATTTCCTGGGATTGGAGAATTCCAGTGCTACGACAAGTACATGAGAGCATCACTGGAAGCAGCAGCAGAAGCTATAGGGAAGAAGGAGTGGGGGAGAAGTGGGCCCCACGACTCCGGCCAGTACAACCAATTCCCGGAGGACACCGGATTCTTCCGCAAGGACGGAACCTGGAACTCCGACTACGGCCAATTCTTCCTCACCTGGTACTCCTCCTCTCTCCTCCATCACGCCGACCGGATCCTCGATTCCGCCGCCCGAATATTCCACTCCTCCGGCCCCAAACTCTCCGCCAAAATCGCCGGCATCCACTGGCACTACAACACCCGATCTCACGCCGCCGAACTCACCGCCGGCTACTACAACACCCGATCCCGTGACGGCTACCTCCCGATCGCGCAAACCCTAGCCAAGCACGGCGCCATCTTCAACTTCACGTGTATGGAGATGAGGGACTCGCAGCAACCTCACCACGCCGGTTGCTCGCCGGAGGGACTGGTCCGGCAGGTGAAGGCGGCGGCGAAGGCGGCGAGGGTGCAGCTCGCGGGAGAGAACGCGTTGGAGAGGTACGATCGGGATGGGTACGGCCAGGTGATGGAGACGAGTAGATCGGATTGCGGGAACGGATTGAGCGCGTTTACGTATCTGAGGATGAATAAGAGGCTGTTCGATGGCGAGAATTGGAGGCAATTTGTGGATTTTGTGAGGGCAATGTCGGAAGGTGGAAGATCACGGAGACTTCCCGATTATGATTCCGTTGGGAGTGATCTCTACGTTGGGCACATCAAAGGGATTCACAGAAAGCGTCTTGAAGAAGATCAGAAGGTTCTCCAAGAACCACttggttatttacttaattacctTTCTGAACCAAAGGAGATCGAGATGATGATTCAGAAGTTTCAGAGGTCTCTGAACATTGCAATGCTTGCTCCAAGCTTTCCACAATCTGAGACATGGTTGGCCTATCTTGAGGATTCTTCTTTAAACACGAGTCTGCCAACTTGGCAACTTTGCGAACTGAGCCGGGAGAAAAATTGTTCCTGA	1875	0.5131	MALTLRSSNSFFNHTEIKVVKSPDDFPCTVCFARTKPSFRLRAKSTMQEPPHISRAAASAATDVVLELEAKEKLHPPLVAPHRHDDSMRVPVFVMMPLDTVTMGGTLNKARAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLRYNWEAYVELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPDLVYTDRSGRRNPEYISLGCDSIPVLRGRTPLQVYSDFMTSFRDRFRDYLGSVIVEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEAAAEAIGKKEWGRSGPHDSGQYNQFPEDTGFFRKDGTWNSDYGQFFLTWYSSSLLHHADRILDSAARIFHSSGPKLSAKIAGIHWHYNTRSHAAELTAGYYNTRSRDGYLPIAQTLAKHGAIFNFTCMEMRDSQQPHHAGCSPEGLVRQVKAAAKAARVQLAGENALERYDRDGYGQVMETSRSDCGNGLSAFTYLRMNKRLFDGENWRQFVDFVRAMSEGGRSRRLPDYDSVGSDLYVGHIKGIHRKRLEEDQKVLQEPLGYLLNYLSEPKEIEMMIQKFQRSLNIAMLAPSFPQSETWLAYLEDSSLNTSLPTWQLCELSREKNCS	624

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto11g1858	624	ProSitePatterns	Beta-amylase active site 1.	171	179	IPR018238	GO:0000272\|GO:0016161
	Sto11g1858	624	Pfam	Glycosyl hydrolase family 14	93	510	IPR001554	GO:0000272\|GO:0016161
	Sto11g1858	624	PANTHER	-	1	546	IPR001554	GO:0000272\|GO:0016161
	Sto11g1858	624	PANTHER	BETA-AMYLASE 3, CHLOROPLASTIC	1	546	-	-
	Sto11g1858	624	SUPERFAMILY	(Trans)glycosidases	89	517	IPR017853	-
	Sto11g1858	624	Gene3D	Glycosidases	83	542	-	-
	Sto11g1858	624	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	124	138	IPR001554	GO:0000272\|GO:0016161
	Sto11g1858	624	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	145	163	IPR001554	GO:0000272\|GO:0016161
	Sto11g1858	624	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	167	188	IPR001554	GO:0000272\|GO:0016161
	Sto11g1858	624	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	259	281	IPR001554	GO:0000272\|GO:0016161
	Sto11g1858	624	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	334	353	IPR001554	GO:0000272\|GO:0016161
	Sto11g1858	624	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	370	386	IPR001554	GO:0000272\|GO:0016161
	Sto11g1858	624	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	387	398	IPR001554	GO:0000272\|GO:0016161
	Sto11g1858	624	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	405	428	IPR001554	GO:0000272\|GO:0016161
	Sto11g1858	624	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	442	464	IPR001554	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto11g1858	Sto-Chr11	17350099	17355809	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto11g1858	1	548	Glycoside Hydrolase	AT4G17090	68.488	0.0	808

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto11g1858	K01177		-	gmx:100818063	849.736

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto11g1858	11	17350099	17355809	Sto11g1858	11	17350099	17355809	ECH