Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1852 ATGGACTCACAACAGAGCAATTTATTCGAGGCCGCTTCGCAACCGGACACCGGCAACGACGCGTACACCTTCCTCGAATTCAACACTCAGGGGGAAGATTTCGACTACCCTGAGTTCCGTGACCCGATTAGGTCTCCGGTGGCATGGCCCACCGCGTCCGATTCTCTGGCCGACCCGACGGAACGTGGTGGTGGAGGTGGTTCTGGGTCTGATCACCAGTCCGATGCCTCGCCCGTTTCAGTAGCTCCAGGAAGCGCCACGAAAGGCCGGGCAGCGGGGTCGGGCAGCAGCAGCAGCGGGAATAGCCAGATGGTTGACACGCTGGCTGCTGGGATGAGCGGGTTGAATTTTGAGGATACTGGTGATGATGAGAATTTTGAGTACGGTAAGGGAGATTTCAATGAACATGCTTGCCGATATTGCGGGGTCTCTAACCCAGCATGTGTTGTGAGGTGCAATGTACCTTCGTGTCGCAAATGGTTTTGTAATTCACGCGGGAACACGTCTGGTTCACACATTGTAAATCACCTGGTTCGAGCAAAACACAAGGAAGTCTGTCTTCACAAAGATAGTCCATTGGGAGAAACAATTCTTGAATGCTACAATTGTGGGTGCCGTAATGTGTTTCTCCTTGGATTTATTTCTGCAAAAACAGAAAGTGTAGTTGTTCTTCTTTGTCGTGAACCTTGCTTGAATGTTAATGCATTGAAGGACATGAATTGGGACCTCAGCCAATGGTGCCCTTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTGAGGGCACGTCAGATAAGTGCACAGCAAATAAATAAGGTGGAAGAGCTTTGGAAGACAAATCCTGATGCTTCTCTTGAAGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGTCTGTGGCTCTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCGCTTATTAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCTCAAAGCAAGGACAATGTCACGATTCGATGGGATATTGGTCTTAATAAGAAGCGTGTTGCATACTTTGTTTTCCCAAAGGAAGATAACGAGTTGCGGCTAGTACCTGGAGATGAATTACGATTGCGGTATTCTGGAGATGCTGCACATCCAGCATGGCAGTCAGTGGGGCATGTGATTAAGTTAACTGCACAAGAGGAGGTTGCACTTGAACTTCGTGCTAGTCAGGGGGTTCCAGTTGATACAAACCATGGTTTTAGTGTTGATTTTGTTTGGAAGAGTACAAGCTTTGATAGGATGCAGGGAGCTATGAAAACCTTTGCTGTGGATGAGACTAGTGTAAGCGGGTATATTTACCATCACTTATTGGGCCATGAAGTTGAGGTTCAGATGGTGCGCAATGCATTGCCTCGGCGCTTTGGTGCACCCGGGCTCCCAGAGCTCAATGCATCTCAAGTTTTTGCAGTTAAAAGTGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGACCTCCTGGAACTGGCAAGACTGTAACTTCTGCAGCAATAGTGTATCATATGGCAAAACAAGGTCAGGGACAGgtTTTGGTTTGTGCACCTAGCAATGTGGCTGTAGACCAGCTAGCTGAAAAGATAAGTGCTACTGGGTTAAAGGTTGTGAGGCTTTGTGCAAAGTCAAGGGAGGCTGTTAGTTCCCCGGTTGAGCACTTAACACTTCACTACCAGGTTCGACACCTCGACACATCCGACAAGAGTGAGCTTCACAAGTTACAACTGCTGAAAGATGAACAAGGAGAGCTTTCCAGCAGTGATGAGAAAAAGTACAAAGCACTTAAGCAAGCAACAGAGAGGGAAATTTCTCAGAGTGCTGATGTGATCTGCTGCACCTGTGTTGGTGCTGGAGATCCTCGGTTGGCTAACTTCCGGTTCCGTCAGgtACTTATTGATGAGTCTACTCAGGCAACAGAACCTGAATGCCTCATTCCTTTGGTTCTTGGAGTCAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCGGTCATTATGTGCAAGAAAGCAGCTCGTGCAGGGCTAGCACAGTCACTTTTTGAGCGCCTTGTTTTACTTGGTGTGAAACCAATTAGATTGCAGGTTCAGTATCGTATGCATCCATCACTTTCTGAATTCCCCTCGAACAGCTTTTATGAGGGCACCCTGCAAAATGGAGTCACTGTTAATGAAAGGCAATTATCCGGAATTGATTTTCCCTGGCCTGTGCCAAATCGTCCCATGTTTTTCTATGTTCAGATGGGACAAGAAGAAATTAGTGCTAGTGGAACATCTTATTTAAATAGGACTGAGGCTGCAAATGTAGAAAAAATTGTAACTACTTTCTTAAGAAGTGGTGTAGTCCCTAGTCAGATCGGTGTGATAACACCTTATGAAGGCCAGAGAGCTTATATTGTGAACTACATGGCAAGGAATGGTGCTCTCAGGCAGCAACTTTACAAGGAGATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATAATTCTATCATGTGTTAGAAGTAATGAGCATCAGGGCATTGGATTCCTCAATGATCCTCGAAGGCTTAATGTTGCTTTAACACGAGCTAGATATGGTATTGTTATTCTGGGAAATCCTAAAGTTCTGAGCAAACAGCCTCTGTGGAATGGTTTACTGACACACTTCAAGGAACATGAATGCTTGGTGGAAGGTCCTTTAAATAACTTGAAACAGAGTATGGTTCAGTTCCAGAAACCCAAAAAGTGGGGTTTAAATGAAGATTACAAATGTATCTCATGGTTGGCCATATGCAGATGTACAATGATAGAAGGCTCTTTTATGGTAGTGGACCTGGAGTTGTGGCTAATGATAATTTTGGGTCTGTTAGCTCTGGCTCAACTTCAGATAGAAGGAACGGCCGAGGAAGGGGTTCTTATGTACCACCTGGCCCACCGAATGGAACACATAAGCCTGTTCCTGGAGTGCACCCAGCTGGGTATCCTGTTCCAAGGGTACCCCTGCCACCTTTTCATGGTGGTCCTCAGTCTCAACCATATGCGATTCCGACACGTGGAGCTGTGCATGGACCTGTTGGGGCAGTTCCACGTGTACCTCCTCCTGGGAATGCCAGTTCAAGGGGCAGGTCAATCATTTCGAGATCAGTTTTCCATGCCAGGAATGTCCCAGGATTTCTTGGGCGATGACTTCAAAAGCCAGGGATCTCAGGTTCCTTATAATGTTACTGATTTCTCTACACAGGCTTCCCAAAGTGGATATGCTGTTGATTATGCTACACAAGGAGCACAGGGTGGATTTCCAGGAAACTATCTGAATCAGAATTCTCAAGCAGGATATTCTCGCTTTGGTTCTGGAAATGATTTTATGTCTCAGGACATGACCCATGGATCACCGGGTTTATTCACTCAGGCTGGCTTTAATGATCCGTCGCAAGATGATGCGTCACAAAGCCATTTCGGCCTGGCCAATGCCAACCCTCTTCAGTCTCAGGGCCTGATGAATTCCCTCTACTCCCAGCCTTTTGCTCACTACAACACTCAGCCGCTGAACCTGCAGGCTTCCCAGCAGCAGCCTCAGAGTCAGAGCTCTCAAAATCAGAAAATTCACTATAACGGTTGA 3681 0.4618 MDSQQSNLFEAASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTASDSLADPTERGGGGGSGSDHQSDASPVSVAPGSATKGRAAGSGSSSSGNSQMVDTLAAGMSGLNFEDTGDDENFEYGKGDFNEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDTNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQLLKDEQGELSSSDEKKYKALKQATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQLSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMARNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHFKEHECLVEGPLNNLKQSMVQFQKPKKWGLNEDYKCISWLAICRCTMIEGSFMVVDLELWLMIILGLLALAQLQIEGTAEEGVLMYHLAHRMEHISLFLECTQLGILFQGYPCHLFMVVLSLNHMRFRHVELCMDLLGQFHVYLLLGMPVQGAGQSFRDQFSMPGMSQDFLGDDFKSQGSQVPYNVTDFSTQASQSGYAVDYATQGAQGGFPGNYLNQNSQAGYSRFGSGNDFMSQDMTHGSPGLFTQAGFNDPSQDDASQSHFGLANANPLQSQGLMNSLYSQPFAHYNTQPLNLQASQQQPQSQSSQNQKIHYNG 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1852 1226 MobiDBLite consensus disorder prediction 1 104 - -
Sto11g1852 1226 Gene3D - 572 624 - -
Sto11g1852 1226 CDD ZBD_UPF1-like 137 259 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Sto11g1852 1226 CDD 1B_UPF1-like 342 429 IPR040812 -
Sto11g1852 1226 Pfam AAA domain 594 689 IPR041677 GO:0004386
Sto11g1852 1226 Pfam Type III restriction enzyme, res subunit 492 554 IPR006935 GO:0003677|GO:0005524|GO:0016787
Sto11g1852 1226 Pfam RNA helicase (UPF2 interacting domain) 136 289 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Sto11g1852 1226 CDD DEXXQc_UPF1 486 721 - -
Sto11g1852 1226 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 495 620 IPR014001 -
Sto11g1852 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 913 IPR027417 -
Sto11g1852 1226 Pfam AAA domain 699 894 IPR041679 -
Sto11g1852 1226 Gene3D - 450 720 IPR027417 -
Sto11g1852 1226 Gene3D - 342 430 - -
Sto11g1852 1226 MobiDBLite consensus disorder prediction 1205 1226 - -
Sto11g1852 1226 Pfam RNA helicase UPF1, 1B domain 341 430 IPR040812 -
Sto11g1852 1226 CDD SF1_C_Upf1 722 911 IPR041679 -
Sto11g1852 1226 PANTHER DNA2/NAM7 HELICASE FAMILY 112 936 IPR045055 -
Sto11g1852 1226 MobiDBLite consensus disorder prediction 1 26 - -
Sto11g1852 1226 MobiDBLite consensus disorder prediction 90 104 - -
Sto11g1852 1226 MobiDBLite consensus disorder prediction 1147 1175 - -
Sto11g1852 1226 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 112 936 - -
Sto11g1852 1226 Gene3D - 721 932 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1852 Sto-Chr11 17246859 17258703 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1852 K14326 - gmx:100793750 1796.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1852 11 17246859 17258703 Sto11g1852 11 17246859 17258703 ECH